Analysis of interatomic Contacts of Structural Units in PDB entry:
5PNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PNV entry

There is 1 chain in PDB entry 5PNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ASP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5PNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
65 68Right-handed 310
Helix 4
AA4
A
98 107Right-handed alpha
Helix 5
AA5
A
117 129Right-handed alpha
Helix 6
AA6
A
130 132Right-handed 310
Helix 7
AA7
A
159 169Right-handed alpha
Helix 8
AA8
A
194 198Right-handed 310
Helix 9
AA9
A
216 218Right-handed 310
Helix 10
AB1
A
219 231Right-handed alpha
Helix 11
AB2
A
231 238Right-handed alpha
Helix 12
AB3
A
240 245Right-handed 310
Helix 13
AB4
A
250 257Right-handed alpha
Helix 14
AB5
A
299 307Right-handed alpha
Helix 15
AB6
A
319 329Right-handed alpha
Helix 16
AB7
A
329 341Right-handed alpha
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There are 3 sheets in PDB entry 5PNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 51parallel
Strand 3
A
271 274anti-parallel
Strand 4
A
199 207anti-parallel
Strand 5
A
288 295anti-parallel
Strand 6
A
179 183anti-parallel
Strand 7
A
135 141anti-parallel
Strand 8
A
75 82anti-parallel
Strand 9
A
85 92anti-parallel
Strand 10
A
247 249anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
96 97anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
210 215anti-parallel
Strand 4
A
262 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il