Analysis of interatomic Contacts of Structural Units in PDB entry:
5PRN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5PRN entry

There is 1 chain in PDB entry 5PRN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 289

There are 4 helices in PDB entry 5PRN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	60	62	Right-handed 310
Helix 2	2	A	88	91	Right-handed alpha
Helix 3	3	A	157	159	Right-handed 310
Helix 4	4	A	185	187	Right-handed 310

There is 1 sheet ( A) in PDB entry 5PRN.

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	37	first strand
Strand 2	A	2	15	anti-parallel
Strand 3	A	279	288	anti-parallel
Strand 4	A	265	273	anti-parallel
Strand 5	A	252	262	anti-parallel
Strand 6	A	235	244	anti-parallel
Strand 7	A	223	232	anti-parallel
Strand 8	A	206	214	anti-parallel
Strand 9	A	193	201	anti-parallel
Strand 10	A	175	183	anti-parallel
Strand 11	A	163	171	anti-parallel
Strand 12	A	142	150	anti-parallel
Strand 13	A	131	139	anti-parallel
Strand 14	A	78	83	anti-parallel
Strand 15	A	70	75	anti-parallel
Strand 16	A	46	56	anti-parallel
Strand 17	A	30	40	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5PRN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5PRN