Analysis of interatomic Contacts of Structural Units in PDB entry:
5PZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PZM entry

There are 2 chains in PDB entry 5PZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1MET 573
B
 SER 1ALA 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5PZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 43Right-handed 310
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
61 76Right-handed alpha
Helix 4
AA4
A
84 91Right-handed alpha
Helix 5
AA5
A
104 110Right-handed alpha
Helix 6
AA6
A
112 129Right-handed alpha
Helix 7
AA7
A
164 188Right-handed alpha
Helix 8
AA8
A
189 195Right-handed 310
Helix 9
AA9
A
196 210Right-handed alpha
Helix 10
AB1
A
223 228Right-handed alpha
Helix 11
AB2
A
229 241Right-handed alpha
Helix 12
AB3
A
246 260Right-handed alpha
Helix 13
AB4
A
286 306Right-handed alpha
Helix 14
AB5
A
328 346Right-handed alpha
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
388 401Right-handed alpha
Helix 17
AB8
A
406 415Right-handed alpha
Helix 18
AB9
A
418 424Right-handed alpha
Helix 19
AC1
A
424 437Right-handed alpha
Helix 20
AC2
A
455 457Right-handed 310
Helix 21
AC3
A
458 468Right-handed alpha
Helix 22
AC4
A
469 473Right-handed 310
Helix 23
AC5
A
478 493Right-handed alpha
Helix 24
AC6
A
496 513Right-handed alpha
Helix 25
AC7
A
515 526Right-handed alpha
Helix 26
AC8
A
539 543Right-handed 310
Helix 27
AC9
B
41 43Right-handed 310
Helix 28
AD1
B
44 53Right-handed alpha
Helix 29
AD2
B
61 76Right-handed alpha
Helix 30
AD3
B
84 91Right-handed alpha
Helix 31
AD4
B
104 110Right-handed alpha
Helix 32
AD5
B
112 129Right-handed alpha
Helix 33
AD6
B
164 188Right-handed alpha
Helix 34
AD7
B
189 195Right-handed 310
Helix 35
AD8
B
196 210Right-handed alpha
Helix 36
AD9
B
223 228Right-handed alpha
Helix 37
AE1
B
229 241Right-handed alpha
Helix 38
AE2
B
246 260Right-handed alpha
Helix 39
AE3
B
286 306Right-handed alpha
Helix 40
AE4
B
328 346Right-handed alpha
Helix 41
AE5
B
359 363Right-handed 310
Helix 42
AE6
B
388 401Right-handed alpha
Helix 43
AE7
B
406 416Right-handed alpha
Helix 44
AE8
B
418 424Right-handed alpha
Helix 45
AE9
B
424 437Right-handed alpha
Helix 46
AF1
B
455 457Right-handed 310
Helix 47
AF2
B
458 468Right-handed alpha
Helix 48
AF3
B
469 473Right-handed 310
Helix 49
AF4
B
478 493Right-handed alpha
Helix 50
AF5
B
496 513Right-handed alpha
Helix 51
AF6
B
515 526Right-handed alpha
Helix 52
AF7
B
539 543Right-handed 310
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There are 11 sheets in PDB entry 5PZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 163anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
144 145anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 316anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
380 386anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
561 563parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
565 566anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
136 140parallel
Strand 5
B
159 162anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
144 145anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
309 316anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 374first strand
Strand 2
B
380 386anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
450 454anti-parallel
Strand 3
B
561 563parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il