Analysis of interatomic Contacts of Structural Units in PDB entry:
5PZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PZU entry

There are 4 chains in PDB entry 5PZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9SER 335
B
 ASP 9SER 335
C
 ASP 9SER 335
D
 ASP 9SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5PZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
28 49Right-handed alpha
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
72 87Right-handed alpha
Helix 5
AA5
A
106 108Right-handed 310
Helix 6
AA6
A
122 129Right-handed 310
Helix 7
AA7
A
148 153Right-handed 310
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
212 219Right-handed 310
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
A
280 291Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
320 334Right-handed alpha
Helix 15
AB6
B
12 24Right-handed alpha
Helix 16
AB7
B
28 49Right-handed alpha
Helix 17
AB8
B
52 57Right-handed alpha
Helix 18
AB9
B
73 87Right-handed alpha
Helix 19
AC1
B
106 108Right-handed 310
Helix 20
AC2
B
122 129Right-handed 310
Helix 21
AC3
B
148 153Right-handed 310
Helix 22
AC4
B
155 159Right-handed 310
Helix 23
AC5
B
212 219Right-handed 310
Helix 24
AC6
B
220 232Right-handed alpha
Helix 25
AC7
B
247 259Right-handed alpha
Helix 26
AC8
B
280 291Right-handed alpha
Helix 27
AC9
B
301 305Right-handed 310
Helix 28
AD1
B
320 334Right-handed alpha
Helix 29
AD2
C
12 24Right-handed alpha
Helix 30
AD3
C
28 49Right-handed alpha
Helix 31
AD4
C
52 57Right-handed alpha
Helix 32
AD5
C
72 87Right-handed alpha
Helix 33
AD6
C
106 110Right-handed 310
Helix 34
AD7
C
122 129Right-handed 310
Helix 35
AD8
C
148 153Right-handed 310
Helix 36
AD9
C
155 159Right-handed 310
Helix 37
AE1
C
212 219Right-handed 310
Helix 38
AE2
C
220 232Right-handed alpha
Helix 39
AE3
C
247 259Right-handed alpha
Helix 40
AE4
C
280 291Right-handed alpha
Helix 41
AE5
C
301 305Right-handed 310
Helix 42
AE6
C
320 334Right-handed alpha
Helix 43
AE7
D
12 24Right-handed alpha
Helix 44
AE8
D
28 49Right-handed alpha
Helix 45
AE9
D
52 57Right-handed alpha
Helix 46
AF1
D
73 87Right-handed alpha
Helix 47
AF2
D
106 110Right-handed 310
Helix 48
AF3
D
122 129Right-handed 310
Helix 49
AF4
D
148 153Right-handed 310
Helix 50
AF5
D
155 159Right-handed 310
Helix 51
AF6
D
212 219Right-handed 310
Helix 52
AF7
D
220 232Right-handed alpha
Helix 53
AF8
D
247 259Right-handed alpha
Helix 54
AF9
D
280 291Right-handed alpha
Helix 55
AG1
D
301 305Right-handed 310
Helix 56
AG2
D
320 334Right-handed alpha
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There are 9 sheets in PDB entry 5PZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
110 121parallel
Strand 4
A
132 140anti-parallel
Strand 5
A
161 167anti-parallel
Strand 6
A
171 177anti-parallel
Strand 7
A
180 187anti-parallel
Strand 8
A
192 197anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
208 210parallel
Strand 3
A
261 264parallel
Strand 4
A
316 319anti-parallel
Strand 5
A
294 296anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
110 121parallel
Strand 4
B
132 140anti-parallel
Strand 5
B
161 167anti-parallel
Strand 6
B
171 177anti-parallel
Strand 7
B
180 187anti-parallel
Strand 8
B
192 197anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
208 210parallel
Strand 3
B
261 264parallel
Strand 4
B
316 319anti-parallel
Strand 5
B
294 296anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
91 96anti-parallel
Strand 3
C
113 121parallel
Strand 4
C
132 140anti-parallel
Strand 5
C
161 167anti-parallel
Strand 6
C
171 177anti-parallel
Strand 7
C
180 187anti-parallel
Strand 8
C
192 197anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 242first strand
Strand 2
C
208 210parallel
Strand 3
C
261 264parallel
Strand 4
C
316 319anti-parallel
Strand 5
C
294 296anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 276first strand
Strand 2
C
313 314anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
91 96anti-parallel
Strand 3
D
113 121parallel
Strand 4
D
132 140anti-parallel
Strand 5
D
161 167anti-parallel
Strand 6
D
171 177anti-parallel
Strand 7
D
180 186anti-parallel
Strand 8
D
193 197anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 242first strand
Strand 2
D
208 210parallel
Strand 3
D
261 264parallel
Strand 4
D
316 319anti-parallel
Strand 5
D
294 296anti-parallel
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