Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Q04 entry

There are 5 chains in PDB entry 5Q04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	SER 335
B	ASP 9	SER 335
C	ASP 9	SER 335
D	ASP 9	SER 335
E	ASP 9	ALA 43

There are112 helices in PDB entry 5Q04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	28	49	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed alpha
Helix 4	AA4	A	72	87	Right-handed alpha
Helix 5	AA5	A	106	108	Right-handed 310
Helix 6	AA6	A	122	129	Right-handed 310
Helix 7	AA7	A	148	153	Right-handed 310
Helix 8	AA8	A	155	157	Right-handed 310
Helix 9	AA9	A	212	219	Right-handed 310
Helix 10	AB1	A	220	232	Right-handed alpha
Helix 11	AB2	A	247	259	Right-handed alpha
Helix 12	AB3	A	280	291	Right-handed alpha
Helix 13	AB4	A	301	305	Right-handed 310
Helix 14	AB5	A	320	334	Right-handed alpha
Helix 15	AB6	B	12	24	Right-handed alpha
Helix 16	AB7	B	28	49	Right-handed alpha
Helix 17	AB8	B	52	57	Right-handed alpha
Helix 18	AB9	B	73	87	Right-handed alpha
Helix 19	AC1	B	106	108	Right-handed 310
Helix 20	AC2	B	122	129	Right-handed 310
Helix 21	AC3	B	148	153	Right-handed 310
Helix 22	AC4	B	155	159	Right-handed 310
Helix 23	AC5	B	212	219	Right-handed 310
Helix 24	AC6	B	220	232	Right-handed alpha
Helix 25	AC7	B	247	259	Right-handed alpha
Helix 26	AC8	B	280	291	Right-handed alpha
Helix 27	AC9	B	301	305	Right-handed 310
Helix 28	AD1	B	320	334	Right-handed alpha
Helix 29	AD2	C	12	24	Right-handed alpha
Helix 30	AD3	C	28	49	Right-handed alpha
Helix 31	AD4	C	52	57	Right-handed alpha
Helix 32	AD5	C	73	87	Right-handed alpha
Helix 33	AD6	C	106	108	Right-handed 310
Helix 34	AD7	C	122	129	Right-handed 310
Helix 35	AD8	C	148	153	Right-handed 310
Helix 36	AD9	C	155	159	Right-handed 310
Helix 37	AE1	C	212	219	Right-handed 310
Helix 38	AE2	C	220	232	Right-handed alpha
Helix 39	AE3	C	247	259	Right-handed alpha
Helix 40	AE4	C	280	291	Right-handed alpha
Helix 41	AE5	C	301	305	Right-handed 310
Helix 42	AE6	C	320	334	Right-handed alpha
Helix 43	AE7	D	12	25	Right-handed alpha
Helix 44	AE8	D	28	49	Right-handed alpha
Helix 45	AE9	D	52	57	Right-handed alpha
Helix 46	AF1	D	73	87	Right-handed alpha
Helix 47	AF2	D	106	108	Right-handed 310
Helix 48	AF3	D	122	129	Right-handed 310
Helix 49	AF4	D	148	153	Right-handed 310
Helix 50	AF5	D	155	157	Right-handed 310
Helix 51	AF6	D	212	219	Right-handed 310
Helix 52	AF7	D	220	232	Right-handed alpha
Helix 53	AF8	D	247	259	Right-handed alpha
Helix 54	AF9	D	280	291	Right-handed alpha
Helix 55	AG1	D	301	305	Right-handed 310
Helix 56	AG2	D	320	334	Right-handed alpha
Helix 57	AG3	E	12	24	Right-handed alpha
Helix 58	AG4	E	28	49	Right-handed alpha
Helix 59	AG5	E	52	57	Right-handed alpha
Helix 60	AG6	E	72	87	Right-handed alpha
Helix 61	AG7	E	106	108	Right-handed 310
Helix 62	AG8	E	122	129	Right-handed 310
Helix 63	AG9	E	148	153	Right-handed 310
Helix 64	AH1	E	155	157	Right-handed 310
Helix 65	AH2	E	212	219	Right-handed 310
Helix 66	AH3	E	220	232	Right-handed alpha
Helix 67	AH4	E	247	259	Right-handed alpha
Helix 68	AH5	E	280	291	Right-handed alpha
Helix 69	AH6	E	301	305	Right-handed 310
Helix 70	AH7	E	320	334	Right-handed alpha
Helix 71	AH8	F	12	24	Right-handed alpha
Helix 72	AH9	F	28	49	Right-handed alpha
Helix 73	AI1	F	52	57	Right-handed alpha
Helix 74	AI2	F	73	87	Right-handed alpha
Helix 75	AI3	F	106	108	Right-handed 310
Helix 76	AI4	F	122	129	Right-handed 310
Helix 77	AI5	F	148	153	Right-handed 310
Helix 78	AI6	F	155	159	Right-handed 310
Helix 79	AI7	F	212	219	Right-handed 310
Helix 80	AI8	F	220	232	Right-handed alpha
Helix 81	AI9	F	247	259	Right-handed alpha
Helix 82	AJ1	F	280	291	Right-handed alpha
Helix 83	AJ2	F	301	305	Right-handed 310
Helix 84	AJ3	F	320	334	Right-handed alpha
Helix 85	AJ4	G	12	24	Right-handed alpha
Helix 86	AJ5	G	28	49	Right-handed alpha
Helix 87	AJ6	G	52	57	Right-handed alpha
Helix 88	AJ7	G	73	87	Right-handed alpha
Helix 89	AJ8	G	106	108	Right-handed 310
Helix 90	AJ9	G	122	129	Right-handed 310
Helix 91	AK1	G	148	153	Right-handed 310
Helix 92	AK2	G	155	159	Right-handed 310
Helix 93	AK3	G	212	219	Right-handed 310
Helix 94	AK4	G	220	232	Right-handed alpha
Helix 95	AK5	G	247	259	Right-handed alpha
Helix 96	AK6	G	280	291	Right-handed alpha
Helix 97	AK7	G	301	305	Right-handed 310
Helix 98	AK8	G	320	334	Right-handed alpha
Helix 99	AK9	H	12	24	Right-handed alpha
Helix 100	AL1	H	28	49	Right-handed alpha
Helix 101	AL2	H	52	57	Right-handed alpha
Helix 102	AL3	H	73	87	Right-handed alpha
Helix 103	AL4	H	106	108	Right-handed 310
Helix 104	AL5	H	122	129	Right-handed 310
Helix 105	AL6	H	148	153	Right-handed 310
Helix 106	AL7	H	155	157	Right-handed 310
Helix 107	AL8	H	212	219	Right-handed 310
Helix 108	AL9	H	220	232	Right-handed alpha
Helix 109	AM1	H	247	259	Right-handed alpha
Helix 110	AM2	H	280	291	Right-handed alpha
Helix 111	AM3	H	301	305	Right-handed 310
Helix 112	AM4	H	320	334	Right-handed alpha

There are 18 sheets in PDB entry 5Q04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	110	121	parallel
Strand 4	A	132	140	anti-parallel
Strand 5	A	159	167	anti-parallel
Strand 6	A	171	177	anti-parallel
Strand 7	A	180	186	anti-parallel
Strand 8	A	193	197	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	208	210	parallel
Strand 3	A	261	264	parallel
Strand 4	A	316	319	anti-parallel
Strand 5	A	294	296	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	110	121	parallel
Strand 4	B	132	140	anti-parallel
Strand 5	B	161	167	anti-parallel
Strand 6	B	171	177	anti-parallel
Strand 7	B	180	186	anti-parallel
Strand 8	B	193	197	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	208	210	parallel
Strand 3	B	261	264	parallel
Strand 4	B	316	319	anti-parallel
Strand 5	B	294	296	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	110	121	parallel
Strand 4	C	132	140	anti-parallel
Strand 5	C	161	167	anti-parallel
Strand 6	C	171	177	anti-parallel
Strand 7	C	180	186	anti-parallel
Strand 8	C	193	197	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	208	210	parallel
Strand 3	C	261	264	parallel
Strand 4	C	316	319	anti-parallel
Strand 5	C	294	296	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	313	314	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	110	121	parallel
Strand 4	D	132	140	anti-parallel
Strand 5	D	159	167	anti-parallel
Strand 6	D	171	177	anti-parallel
Strand 7	D	180	186	anti-parallel
Strand 8	D	193	197	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	208	210	parallel
Strand 3	D	261	264	parallel
Strand 4	D	316	319	anti-parallel
Strand 5	D	294	296	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	313	314	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	104	first strand
Strand 2	E	91	96	anti-parallel
Strand 3	E	110	121	parallel
Strand 4	E	132	140	anti-parallel
Strand 5	E	159	167	anti-parallel
Strand 6	E	171	177	anti-parallel
Strand 7	E	180	186	anti-parallel
Strand 8	E	193	197	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	242	first strand
Strand 2	E	208	210	parallel
Strand 3	E	261	264	parallel
Strand 4	E	316	319	anti-parallel
Strand 5	E	294	296	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	104	first strand
Strand 2	F	91	96	anti-parallel
Strand 3	F	110	121	parallel
Strand 4	F	132	140	anti-parallel
Strand 5	F	161	167	anti-parallel
Strand 6	F	171	177	anti-parallel
Strand 7	F	180	186	anti-parallel
Strand 8	F	193	197	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	242	first strand
Strand 2	F	208	210	parallel
Strand 3	F	261	264	parallel
Strand 4	F	316	319	anti-parallel
Strand 5	F	294	296	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	104	first strand
Strand 2	G	91	96	anti-parallel
Strand 3	G	110	121	parallel
Strand 4	G	132	140	anti-parallel
Strand 5	G	161	167	anti-parallel
Strand 6	G	171	177	anti-parallel
Strand 7	G	180	187	anti-parallel
Strand 8	G	192	197	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	242	first strand
Strand 2	G	208	210	parallel
Strand 3	G	261	264	parallel
Strand 4	G	316	319	anti-parallel
Strand 5	G	294	296	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	104	first strand
Strand 2	H	91	96	anti-parallel
Strand 3	H	110	121	parallel
Strand 4	H	132	140	anti-parallel
Strand 5	H	159	167	anti-parallel
Strand 6	H	171	177	anti-parallel
Strand 7	H	180	186	anti-parallel
Strand 8	H	193	197	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	241	242	first strand
Strand 2	H	208	210	parallel
Strand 3	H	261	264	parallel
Strand 4	H	316	319	anti-parallel
Strand 5	H	294	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Q04

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q04