Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Q0C entry

There are 5 chains in PDB entry 5Q0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	GLN 336
B	THR 9	GLN 336
C	THR 9	GLN 336
D	THR 9	GLN 336
E	THR 9	THR 15

There are112 helices in PDB entry 5Q0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	29	50	Right-handed alpha
Helix 3	AA3	A	53	58	Right-handed alpha
Helix 4	AA4	A	69	89	Right-handed alpha
Helix 5	AA5	A	107	109	Right-handed 310
Helix 6	AA6	A	123	127	Right-handed 310
Helix 7	AA7	A	149	154	Right-handed 310
Helix 8	AA8	A	156	160	Right-handed 310
Helix 9	AA9	A	213	220	Right-handed 310
Helix 10	AB1	A	221	233	Right-handed alpha
Helix 11	AB2	A	248	260	Right-handed alpha
Helix 12	AB3	A	281	292	Right-handed alpha
Helix 13	AB4	A	302	306	Right-handed 310
Helix 14	AB5	A	321	335	Right-handed alpha
Helix 15	AB6	B	13	25	Right-handed alpha
Helix 16	AB7	B	29	50	Right-handed alpha
Helix 17	AB8	B	53	58	Right-handed alpha
Helix 18	AB9	B	69	88	Right-handed alpha
Helix 19	AC1	B	107	109	Right-handed 310
Helix 20	AC2	B	123	127	Right-handed 310
Helix 21	AC3	B	149	154	Right-handed 310
Helix 22	AC4	B	156	160	Right-handed 310
Helix 23	AC5	B	213	220	Right-handed 310
Helix 24	AC6	B	221	233	Right-handed alpha
Helix 25	AC7	B	248	260	Right-handed alpha
Helix 26	AC8	B	281	292	Right-handed alpha
Helix 27	AC9	B	302	306	Right-handed 310
Helix 28	AD1	B	321	335	Right-handed alpha
Helix 29	AD2	C	13	25	Right-handed alpha
Helix 30	AD3	C	29	50	Right-handed alpha
Helix 31	AD4	C	53	58	Right-handed alpha
Helix 32	AD5	C	69	88	Right-handed alpha
Helix 33	AD6	C	107	109	Right-handed 310
Helix 34	AD7	C	123	127	Right-handed 310
Helix 35	AD8	C	149	154	Right-handed 310
Helix 36	AD9	C	156	160	Right-handed 310
Helix 37	AE1	C	213	220	Right-handed 310
Helix 38	AE2	C	221	233	Right-handed alpha
Helix 39	AE3	C	248	260	Right-handed alpha
Helix 40	AE4	C	281	292	Right-handed alpha
Helix 41	AE5	C	302	306	Right-handed 310
Helix 42	AE6	C	321	335	Right-handed alpha
Helix 43	AE7	D	13	25	Right-handed alpha
Helix 44	AE8	D	29	50	Right-handed alpha
Helix 45	AE9	D	53	58	Right-handed alpha
Helix 46	AF1	D	74	88	Right-handed alpha
Helix 47	AF2	D	107	109	Right-handed 310
Helix 48	AF3	D	123	127	Right-handed 310
Helix 49	AF4	D	149	154	Right-handed 310
Helix 50	AF5	D	156	158	Right-handed 310
Helix 51	AF6	D	213	220	Right-handed 310
Helix 52	AF7	D	221	233	Right-handed alpha
Helix 53	AF8	D	248	260	Right-handed alpha
Helix 54	AF9	D	281	292	Right-handed alpha
Helix 55	AG1	D	302	306	Right-handed 310
Helix 56	AG2	D	321	335	Right-handed alpha
Helix 57	AG3	E	13	25	Right-handed alpha
Helix 58	AG4	E	29	50	Right-handed alpha
Helix 59	AG5	E	53	58	Right-handed alpha
Helix 60	AG6	E	69	89	Right-handed alpha
Helix 61	AG7	E	107	109	Right-handed 310
Helix 62	AG8	E	123	127	Right-handed 310
Helix 63	AG9	E	149	154	Right-handed 310
Helix 64	AH1	E	156	158	Right-handed 310
Helix 65	AH2	E	213	220	Right-handed 310
Helix 66	AH3	E	221	233	Right-handed alpha
Helix 67	AH4	E	248	260	Right-handed alpha
Helix 68	AH5	E	281	292	Right-handed alpha
Helix 69	AH6	E	302	306	Right-handed 310
Helix 70	AH7	E	321	335	Right-handed alpha
Helix 71	AH8	F	13	25	Right-handed alpha
Helix 72	AH9	F	29	50	Right-handed alpha
Helix 73	AI1	F	53	58	Right-handed alpha
Helix 74	AI2	F	69	88	Right-handed alpha
Helix 75	AI3	F	107	109	Right-handed 310
Helix 76	AI4	F	123	127	Right-handed 310
Helix 77	AI5	F	149	154	Right-handed 310
Helix 78	AI6	F	156	160	Right-handed 310
Helix 79	AI7	F	213	220	Right-handed 310
Helix 80	AI8	F	221	233	Right-handed alpha
Helix 81	AI9	F	248	260	Right-handed alpha
Helix 82	AJ1	F	281	292	Right-handed alpha
Helix 83	AJ2	F	302	306	Right-handed 310
Helix 84	AJ3	F	321	335	Right-handed alpha
Helix 85	AJ4	G	13	25	Right-handed alpha
Helix 86	AJ5	G	29	50	Right-handed alpha
Helix 87	AJ6	G	53	58	Right-handed alpha
Helix 88	AJ7	G	69	89	Right-handed alpha
Helix 89	AJ8	G	107	109	Right-handed 310
Helix 90	AJ9	G	123	127	Right-handed 310
Helix 91	AK1	G	149	154	Right-handed 310
Helix 92	AK2	G	156	160	Right-handed 310
Helix 93	AK3	G	213	220	Right-handed 310
Helix 94	AK4	G	221	233	Right-handed alpha
Helix 95	AK5	G	248	260	Right-handed alpha
Helix 96	AK6	G	281	292	Right-handed alpha
Helix 97	AK7	G	302	306	Right-handed 310
Helix 98	AK8	G	321	335	Right-handed alpha
Helix 99	AK9	H	13	25	Right-handed alpha
Helix 100	AL1	H	29	50	Right-handed alpha
Helix 101	AL2	H	53	58	Right-handed alpha
Helix 102	AL3	H	69	89	Right-handed alpha
Helix 103	AL4	H	107	109	Right-handed 310
Helix 104	AL5	H	123	127	Right-handed 310
Helix 105	AL6	H	149	154	Right-handed 310
Helix 106	AL7	H	156	160	Right-handed 310
Helix 107	AL8	H	213	220	Right-handed 310
Helix 108	AL9	H	221	233	Right-handed alpha
Helix 109	AM1	H	248	260	Right-handed alpha
Helix 110	AM2	H	281	292	Right-handed alpha
Helix 111	AM3	H	302	306	Right-handed 310
Helix 112	AM4	H	321	335	Right-handed alpha

There are 16 sheets in PDB entry 5Q0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	111	122	parallel
Strand 4	A	133	141	anti-parallel
Strand 5	A	162	168	anti-parallel
Strand 6	A	172	177	anti-parallel
Strand 7	A	182	188	anti-parallel
Strand 8	A	193	201	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	209	211	parallel
Strand 3	A	262	265	parallel
Strand 4	A	317	320	anti-parallel
Strand 5	A	295	297	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	111	122	parallel
Strand 4	B	133	141	anti-parallel
Strand 5	B	162	168	anti-parallel
Strand 6	B	172	177	anti-parallel
Strand 7	B	183	188	anti-parallel
Strand 8	B	193	198	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	209	211	parallel
Strand 3	B	262	265	parallel
Strand 4	B	317	320	anti-parallel
Strand 5	B	295	297	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	111	122	parallel
Strand 4	C	133	141	anti-parallel
Strand 5	C	162	168	anti-parallel
Strand 6	C	172	177	anti-parallel
Strand 7	C	182	187	anti-parallel
Strand 8	C	194	201	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	209	211	parallel
Strand 3	C	262	265	parallel
Strand 4	C	317	320	anti-parallel
Strand 5	C	295	297	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	92	97	anti-parallel
Strand 3	D	111	122	parallel
Strand 4	D	133	141	anti-parallel
Strand 5	D	160	168	anti-parallel
Strand 6	D	172	177	anti-parallel
Strand 7	D	183	187	anti-parallel
Strand 8	D	194	198	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	209	211	parallel
Strand 3	D	262	265	parallel
Strand 4	D	317	320	anti-parallel
Strand 5	D	295	297	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	111	122	parallel
Strand 4	E	133	141	anti-parallel
Strand 5	E	160	168	anti-parallel
Strand 6	E	172	177	anti-parallel
Strand 7	E	182	187	anti-parallel
Strand 8	E	194	201	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	243	first strand
Strand 2	E	209	211	parallel
Strand 3	E	262	265	parallel
Strand 4	E	317	320	anti-parallel
Strand 5	E	295	297	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	92	97	anti-parallel
Strand 3	F	111	122	parallel
Strand 4	F	133	141	anti-parallel
Strand 5	F	162	168	anti-parallel
Strand 6	F	172	177	anti-parallel
Strand 7	F	182	187	anti-parallel
Strand 8	F	194	201	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	243	first strand
Strand 2	F	209	211	parallel
Strand 3	F	262	265	parallel
Strand 4	F	317	320	anti-parallel
Strand 5	F	295	297	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	92	97	anti-parallel
Strand 3	G	111	122	parallel
Strand 4	G	133	141	anti-parallel
Strand 5	G	162	168	anti-parallel
Strand 6	G	172	177	anti-parallel
Strand 7	G	183	188	anti-parallel
Strand 8	G	193	198	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	243	first strand
Strand 2	G	209	211	parallel
Strand 3	G	262	265	parallel
Strand 4	G	317	320	anti-parallel
Strand 5	G	295	297	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	92	97	anti-parallel
Strand 3	H	111	122	parallel
Strand 4	H	133	141	anti-parallel
Strand 5	H	162	168	anti-parallel
Strand 6	H	172	177	anti-parallel
Strand 7	H	183	187	anti-parallel
Strand 8	H	194	198	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	243	first strand
Strand 2	H	209	211	parallel
Strand 3	H	262	265	parallel
Strand 4	H	317	320	anti-parallel
Strand 5	H	295	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Q0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q0C