Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Q0N entry

There are 4 chains in PDB entry 5Q0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 247VAL 475
B
 ASP 745LYS 755
C
 MET 247ASP 474
D
 HIS 746ASP 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5Q0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 265Right-handed alpha
Helix 2
AA2
A
269 280Right-handed alpha
Helix 3
AA3
A
283 308Right-handed alpha
Helix 4
AA4
A
311 315Right-handed 310
Helix 5
AA5
A
316 341Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 378Right-handed alpha
Helix 8
AA8
A
382 395Right-handed alpha
Helix 9
AA9
A
404 427Right-handed alpha
Helix 10
AB1
A
432 446Right-handed alpha
Helix 11
AB2
A
447 449Right-handed 310
Helix 12
AB3
A
450 457Right-handed alpha
Helix 13
AB4
A
466 474Right-handed alpha
Helix 14
AB5
B
746 755Right-handed alpha
Helix 15
AB6
C
250 265Right-handed alpha
Helix 16
AB7
C
269 280Right-handed alpha
Helix 17
AB8
C
283 308Right-handed alpha
Helix 18
AB9
C
311 315Right-handed 310
Helix 19
AC1
C
316 341Right-handed alpha
Helix 20
AC2
C
347 358Right-handed alpha
Helix 21
AC3
C
362 379Right-handed alpha
Helix 22
AC4
C
382 395Right-handed alpha
Helix 23
AC5
C
404 427Right-handed alpha
Helix 24
AC6
C
432 450Right-handed alpha
Helix 25
AC7
C
450 457Right-handed alpha
Helix 26
AC8
C
466 474Right-handed alpha
Helix 27
AC9
D
747 755Right-handed alpha
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There are no sheets in PDB entry 5Q0N
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il