Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Q0P entry

There are 4 chains in PDB entry 5Q0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 247GLN 476
B
 ASP 745ASP 756
C
 MET 247GLN 476
D
 LYS 744GLU 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5Q0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 265Right-handed alpha
Helix 2
AA2
A
269 280Right-handed alpha
Helix 3
AA3
A
283 309Right-handed alpha
Helix 4
AA4
A
311 315Right-handed 310
Helix 5
AA5
A
316 342Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 379Right-handed alpha
Helix 8
AA8
A
382 395Right-handed alpha
Helix 9
AA9
A
404 427Right-handed alpha
Helix 10
AB1
A
432 448Right-handed alpha
Helix 11
AB2
A
450 457Right-handed alpha
Helix 12
AB3
A
466 474Right-handed alpha
Helix 13
AB4
B
746 755Right-handed alpha
Helix 14
AB5
C
250 265Right-handed alpha
Helix 15
AB6
C
269 280Right-handed alpha
Helix 16
AB7
C
283 309Right-handed alpha
Helix 17
AB8
C
311 315Right-handed 310
Helix 18
AB9
C
316 342Right-handed alpha
Helix 19
AC1
C
347 358Right-handed alpha
Helix 20
AC2
C
362 378Right-handed alpha
Helix 21
AC3
C
382 395Right-handed alpha
Helix 22
AC4
C
404 427Right-handed alpha
Helix 23
AC5
C
432 450Right-handed alpha
Helix 24
AC6
C
450 457Right-handed alpha
Helix 25
AC7
C
466 473Right-handed alpha
Helix 26
AC8
D
746 755Right-handed alpha
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There are no sheets in PDB entry 5Q0P
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il