Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Q8H entry

There is 1 chain in PDB entry 5Q8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 700TYR 1040
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5Q8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
702 706Right-handed 310
Helix 2
AA2
A
734 739Right-handed alpha
Helix 3
AA3
A
753 762Right-handed alpha
Helix 4
AA4
A
766 768Right-handed 310
Helix 5
AA5
A
819 825Right-handed 310
Helix 6
AA6
A
826 830Right-handed 310
Helix 7
AA7
A
850 869Right-handed alpha
Helix 8
AA8
A
883 895Right-handed alpha
Helix 9
AA9
A
901 910Right-handed alpha
Helix 10
AB1
A
915 918Right-handed 310
Helix 11
AB2
A
935 937Right-handed 310
Helix 12
AB3
A
938 949Right-handed alpha
Helix 13
AB4
A
965 969Right-handed 310
Helix 14
AB5
A
996 1008Right-handed alpha
Helix 15
AB6
A
1020 1039Right-handed alpha
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There are 3 sheets in PDB entry 5Q8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 714first strand
Strand 2
A
727 729parallel
Strand 3
A
749 752parallel
Strand 4
A
770 773parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 780first strand
Strand 2
A
785 790anti-parallel
Strand 3
A
798 803anti-parallel
Strand 4
A
809 812anti-parallel
Strand 5
A
834 837parallel
Strand 6
A
1011 1014parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 921first strand
Strand 2
A
898 899parallel
Strand 3
A
929 933parallel
Strand 4
A
872 878parallel
Strand 5
A
955 962parallel
Strand 6
A
984 990parallel
Strand 7
A
979 980anti-parallel
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