Analysis of interatomic Contacts of Structural Units in PDB entry:
5QDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5QDC entry

There are 3 chains in PDB entry 5QDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	ASN 385
B	SER -2	ASN 385
C	SER -2	ASN 385

There are 34 helices in PDB entry 5QDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-2	3	Right-handed 310
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	123	127	Right-handed 310
Helix 4	AA4	A	135	144	Right-handed alpha
Helix 5	AA5	A	180	182	Right-handed 310
Helix 6	AA6	A	216	222	Right-handed 310
Helix 7	AA7	A	238	252	Right-handed alpha
Helix 8	AA8	A	276	280	Right-handed 310
Helix 9	AA9	A	301	305	Right-handed alpha
Helix 10	AB1	A	334	339	Right-handed alpha
Helix 11	AB2	A	347	349	Right-handed 310
Helix 12	AB3	A	378	383	Right-handed 310
Helix 13	AB4	B	-2	3	Right-handed 310
Helix 14	AB5	B	53	57	Right-handed 310
Helix 15	AB6	B	123	127	Right-handed 310
Helix 16	AB7	B	135	144	Right-handed alpha
Helix 17	AB8	B	180	182	Right-handed 310
Helix 18	AB9	B	216	222	Right-handed 310
Helix 19	AC1	B	238	252	Right-handed alpha
Helix 20	AC2	B	276	280	Right-handed 310
Helix 21	AC3	B	301	305	Right-handed alpha
Helix 22	AC4	B	334	339	Right-handed alpha
Helix 23	AC5	B	378	383	Right-handed 310
Helix 24	AC6	C	-2	3	Right-handed 310
Helix 25	AC7	C	53	57	Right-handed 310
Helix 26	AC8	C	123	127	Right-handed 310
Helix 27	AC9	C	135	144	Right-handed alpha
Helix 28	AD1	C	180	182	Right-handed 310
Helix 29	AD2	C	216	222	Right-handed 310
Helix 30	AD3	C	238	252	Right-handed alpha
Helix 31	AD4	C	276	280	Right-handed 310
Helix 32	AD5	C	301	305	Right-handed alpha
Helix 33	AD6	C	334	339	Right-handed alpha
Helix 34	AD7	C	378	383	Right-handed alpha

There are 17 sheets in PDB entry 5QDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	25	32	anti-parallel
Strand 4	A	117	120	parallel
Strand 5	A	38	41	anti-parallel
Strand 6	A	95	106	parallel
Strand 7	A	75	86	anti-parallel
Strand 8	A	61	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	75	86	anti-parallel
Strand 4	A	61	70	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	150	154	anti-parallel
Strand 3	A	341	346	anti-parallel
Strand 4	A	351	357	anti-parallel
Strand 5	A	184	192	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	225	227	anti-parallel
Strand 3	A	331	333	parallel
Strand 4	A	234	237	anti-parallel
Strand 5	A	324	327	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	294	300	anti-parallel
Strand 5	A	369	375	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	318	322	anti-parallel
Strand 3	A	306	309	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	14	20	anti-parallel
Strand 4	B	6	8	anti-parallel
Strand 5	B	170	176	anti-parallel
Strand 6	B	150	155	anti-parallel
Strand 7	B	341	346	anti-parallel
Strand 8	B	351	357	anti-parallel
Strand 9	B	184	192	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	94	106	anti-parallel
Strand 4	B	38	41	parallel
Strand 5	B	117	120	anti-parallel
Strand 6	B	25	32	parallel
Strand 7	B	14	20	anti-parallel
Strand 8	B	6	8	anti-parallel
Strand 9	B	170	176	anti-parallel
Strand 10	B	150	155	anti-parallel
Strand 11	B	341	346	anti-parallel
Strand 12	B	351	357	anti-parallel
Strand 13	B	184	192	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	283	288	anti-parallel
Strand 4	B	294	300	anti-parallel
Strand 5	B	369	375	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	331	333	parallel
Strand 3	B	234	237	anti-parallel
Strand 4	B	324	327	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	318	322	anti-parallel
Strand 3	B	306	309	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	25	32	anti-parallel
Strand 4	C	117	120	parallel
Strand 5	C	38	41	anti-parallel
Strand 6	C	94	106	parallel
Strand 7	C	75	86	anti-parallel
Strand 8	C	61	70	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	13	20	anti-parallel
Strand 3	C	75	86	anti-parallel
Strand 4	C	61	70	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	150	154	anti-parallel
Strand 3	C	341	346	anti-parallel
Strand 4	C	351	357	anti-parallel
Strand 5	C	184	192	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	203	208	anti-parallel
Strand 3	C	283	287	anti-parallel
Strand 4	C	295	300	anti-parallel
Strand 5	C	369	374	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	331	333	parallel
Strand 3	C	234	237	anti-parallel
Strand 4	C	324	327	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	318	322	anti-parallel
Strand 3	C	306	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5QDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5QDC