Analysis of interatomic Contacts of Structural Units in PDB entry:
5QJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5QJ3 entry

There are 4 chains in PDB entry 5QJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	PRO 103
B	ASN 114	GLU 577
D	CYS 1	PRO 103
E	VAL 113	GLU 577

There are 55 helices in PDB entry 5QJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	69	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	84	98	Right-handed alpha
Helix 4	AA4	B	173	178	Right-handed alpha
Helix 5	AA5	B	180	188	Right-handed alpha
Helix 6	AA6	B	220	225	Right-handed alpha
Helix 7	AA7	B	243	268	Right-handed alpha
Helix 8	AA8	B	272	295	Right-handed alpha
Helix 9	AA9	B	296	302	Right-handed alpha
Helix 10	AB1	B	302	310	Right-handed alpha
Helix 11	AB2	B	325	332	Right-handed alpha
Helix 12	AB3	B	333	339	Right-handed 310
Helix 13	AB4	B	362	364	Right-handed 310
Helix 14	AB5	B	367	374	Right-handed alpha
Helix 15	AB6	B	376	387	Right-handed alpha
Helix 16	AB7	B	399	404	Right-handed alpha
Helix 17	AB8	B	407	411	Right-handed 310
Helix 18	AB9	B	416	428	Right-handed alpha
Helix 19	AC1	B	432	441	Right-handed alpha
Helix 20	AC2	B	447	456	Right-handed alpha
Helix 21	AC3	B	457	469	Right-handed alpha
Helix 22	AC4	B	470	474	Right-handed 310
Helix 23	AC5	B	475	483	Right-handed alpha
Helix 24	AC6	B	492	509	Right-handed alpha
Helix 25	AC7	B	521	529	Right-handed alpha
Helix 26	AC8	B	532	541	Right-handed alpha
Helix 27	AC9	B	565	567	Right-handed 310
Helix 28	AD1	B	572	576	Right-handed 310
Helix 29	AD2	D	60	69	Right-handed alpha
Helix 30	AD3	D	72	76	Right-handed 310
Helix 31	AD4	D	84	98	Right-handed alpha
Helix 32	AD5	E	173	178	Right-handed alpha
Helix 33	AD6	E	180	188	Right-handed alpha
Helix 34	AD7	E	220	225	Right-handed alpha
Helix 35	AD8	E	243	268	Right-handed alpha
Helix 36	AD9	E	272	295	Right-handed alpha
Helix 37	AE1	E	296	302	Right-handed alpha
Helix 38	AE2	E	302	310	Right-handed alpha
Helix 39	AE3	E	325	332	Right-handed alpha
Helix 40	AE4	E	333	339	Right-handed 310
Helix 41	AE5	E	362	364	Right-handed 310
Helix 42	AE6	E	367	374	Right-handed alpha
Helix 43	AE7	E	376	387	Right-handed alpha
Helix 44	AE8	E	399	404	Right-handed alpha
Helix 45	AE9	E	407	411	Right-handed 310
Helix 46	AF1	E	416	428	Right-handed alpha
Helix 47	AF2	E	432	441	Right-handed alpha
Helix 48	AF3	E	447	456	Right-handed alpha
Helix 49	AF4	E	457	469	Right-handed alpha
Helix 50	AF5	E	475	483	Right-handed alpha
Helix 51	AF6	E	492	509	Right-handed alpha
Helix 52	AF7	E	521	529	Right-handed alpha
Helix 53	AF8	E	532	541	Right-handed alpha
Helix 54	AF9	E	565	567	Right-handed 310
Helix 55	AG1	E	572	576	Right-handed 310

There are 10 sheets in PDB entry 5QJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	B	164	165	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	B	388	390	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	143	144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	358	360	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	547	first strand
Strand 2	B	561	563	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	E	164	165	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	E	388	390	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	143	144	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	344	first strand
Strand 2	E	358	360	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	545	547	first strand
Strand 2	E	561	563	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5QJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5QJ3