Analysis of interatomic Contacts of Structural Units in PDB entry:
5QQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5QQM entry

There are 2 chains in PDB entry 5QQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 177
B
 ARG 1232HIS 1410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5QQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 26Right-handed alpha
Helix 3
AA3
A
67 72Right-handed 310
Helix 4
AA4
A
86 96Right-handed alpha
Helix 5
AA5
A
96 105Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
122 132Right-handed alpha
Helix 8
AA8
A
138 150Right-handed alpha
Helix 9
AA9
A
164 175Right-handed alpha
Helix 10
AB1
B
1233 1258Right-handed alpha
Helix 11
AB2
B
1258 1266Right-handed alpha
Helix 12
AB3
B
1277 1283Right-handed alpha
Helix 13
AB4
B
1284 1295Right-handed alpha
Helix 14
AB5
B
1295 1303Right-handed alpha
Helix 15
AB6
B
1306 1309Right-handed 310
Helix 16
AB7
B
1310 1317Right-handed alpha
Helix 17
AB8
B
1319 1321Right-handed 310
Helix 18
AB9
B
1322 1342Right-handed alpha
Helix 19
AC1
B
1344 1354Right-handed alpha
Helix 20
AC2
B
1358 1382Right-handed alpha
Helix 21
AC3
B
1388 1408Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5QQM.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
3 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
153 156parallel
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