Analysis of interatomic Contacts of Structural Units in PDB entry:
5R1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5R1R entry

There are 7 chains in PDB entry 5R1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 738
D	VAL 358	LEU 375
B	MET 1	ALA 738
E	VAL 358	LEU 375
C	MET 1	ALA 738
F	VAL 358	LEU 375
P	TYR 1	GLY 4

There are120 helices in PDB entry 5R1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	30	Right-handed alpha
Helix 2	2	A	38	48	Right-handed alpha
Helix 3	3	A	55	69	Right-handed alpha
Helix 4	4	A	75	94	Right-handed 310
Helix 5	5	A	102	111	Right-handed alpha
Helix 6	6	A	117	122	Right-handed 310
Helix 7	7	A	125	134	Right-handed alpha
Helix 8	8	A	137	142	Right-handed 310
Helix 9	9	A	145	154	Right-handed alpha
Helix 10	10	A	169	180	Right-handed alpha
Helix 11	11	A	186	201	Right-handed alpha
Helix 12	12	A	209	214	Right-handed alpha
Helix 13	13	A	234	250	Right-handed alpha
Helix 14	14	A	274	276	Right-handed 310
Helix 15	15	A	278	289	Right-handed alpha
Helix 16	16	A	313	316	Right-handed alpha
Helix 17	17	A	326	328	Right-handed 310
Helix 18	18	A	341	348	Right-handed alpha
Helix 19	19	A	358	360	Right-handed 310
Helix 20	20	A	364	370	Right-handed alpha
Helix 21	21	A	372	384	Right-handed alpha
Helix 22	22	A	395	409	Right-handed alpha
Helix 23	23	A	417	422	Right-handed alpha
Helix 24	24	A	428	431	Right-handed alpha
Helix 25	25	A	475	495	Right-handed 310
Helix 26	26	A	501	510	Right-handed alpha
Helix 27	27	A	520	526	Right-handed alpha
Helix 28	28	A	537	562	Right-handed alpha
Helix 29	29	A	568	570	Right-handed 310
Helix 30	30	A	579	582	Right-handed alpha
Helix 31	31	A	585	590	Right-handed 310
Helix 32	32	A	599	609	Right-handed alpha
Helix 33	33	A	623	629	Right-handed alpha
Helix 34	34	A	659	662	Right-handed alpha
Helix 35	35	A	669	671	Right-handed 310
Helix 36	36	A	676	688	Right-handed alpha
Helix 37	37	A	701	703	Right-handed 310
Helix 38	38	A	705	707	Right-handed 310
Helix 39	39	A	711	723	Right-handed alpha
Helix 40	40	D	367	372	Right-handed alpha
Helix 41	41	B	19	30	Right-handed alpha
Helix 42	42	B	38	48	Right-handed alpha
Helix 43	43	B	55	69	Right-handed alpha
Helix 44	44	B	75	94	Right-handed 310
Helix 45	45	B	102	111	Right-handed alpha
Helix 46	46	B	117	122	Right-handed 310
Helix 47	47	B	125	134	Right-handed alpha
Helix 48	48	B	137	142	Right-handed 310
Helix 49	49	B	145	154	Right-handed alpha
Helix 50	50	B	169	181	Right-handed alpha
Helix 51	51	B	186	201	Right-handed alpha
Helix 52	52	B	209	214	Right-handed alpha
Helix 53	53	B	234	250	Right-handed alpha
Helix 54	54	B	274	276	Right-handed 310
Helix 55	55	B	278	289	Right-handed alpha
Helix 56	56	B	313	318	Right-handed alpha
Helix 57	57	B	326	328	Right-handed 310
Helix 58	58	B	341	348	Right-handed alpha
Helix 59	59	B	358	360	Right-handed 310
Helix 60	60	B	364	370	Right-handed alpha
Helix 61	61	B	372	384	Right-handed alpha
Helix 62	62	B	395	409	Right-handed alpha
Helix 63	63	B	417	422	Right-handed alpha
Helix 64	64	B	428	431	Right-handed alpha
Helix 65	65	B	475	495	Right-handed 310
Helix 66	66	B	501	510	Right-handed alpha
Helix 67	67	B	520	526	Right-handed alpha
Helix 68	68	B	537	562	Right-handed alpha
Helix 69	69	B	568	570	Right-handed 310
Helix 70	70	B	579	582	Right-handed alpha
Helix 71	71	B	585	590	Right-handed 310
Helix 72	72	B	599	609	Right-handed alpha
Helix 73	73	B	623	628	Right-handed alpha
Helix 74	74	B	659	662	Right-handed alpha
Helix 75	75	B	669	671	Right-handed 310
Helix 76	76	B	676	688	Right-handed alpha
Helix 77	77	B	701	703	Right-handed 310
Helix 78	78	B	705	707	Right-handed 310
Helix 79	79	B	711	724	Right-handed alpha
Helix 80	80	E	367	372	Right-handed alpha
Helix 81	81	C	19	30	Right-handed alpha
Helix 82	82	C	38	48	Right-handed alpha
Helix 83	83	C	55	69	Right-handed alpha
Helix 84	84	C	75	94	Right-handed 310
Helix 85	85	C	102	111	Right-handed alpha
Helix 86	86	C	117	122	Right-handed 310
Helix 87	87	C	125	134	Right-handed alpha
Helix 88	88	C	137	142	Right-handed 310
Helix 89	89	C	145	154	Right-handed alpha
Helix 90	90	C	169	180	Right-handed alpha
Helix 91	91	C	186	201	Right-handed alpha
Helix 92	92	C	209	214	Right-handed alpha
Helix 93	93	C	234	250	Right-handed alpha
Helix 94	94	C	274	276	Right-handed 310
Helix 95	95	C	278	289	Right-handed alpha
Helix 96	96	C	313	318	Right-handed alpha
Helix 97	97	C	326	328	Right-handed 310
Helix 98	98	C	341	348	Right-handed alpha
Helix 99	99	C	358	360	Right-handed 310
Helix 100	100	C	364	370	Right-handed alpha
Helix 101	101	C	372	384	Right-handed alpha
Helix 102	102	C	395	409	Right-handed alpha
Helix 103	103	C	417	422	Right-handed alpha
Helix 104	104	C	428	431	Right-handed alpha
Helix 105	105	C	475	495	Right-handed 310
Helix 106	106	C	501	510	Right-handed alpha
Helix 107	107	C	520	526	Right-handed alpha
Helix 108	108	C	537	562	Right-handed alpha
Helix 109	109	C	568	570	Right-handed 310
Helix 110	110	C	579	582	Right-handed alpha
Helix 111	111	C	585	590	Right-handed 310
Helix 112	112	C	599	609	Right-handed alpha
Helix 113	113	C	623	628	Right-handed alpha
Helix 114	114	C	659	662	Right-handed alpha
Helix 115	115	C	669	671	Right-handed 310
Helix 116	116	C	676	688	Right-handed alpha
Helix 117	117	C	701	703	Right-handed 310
Helix 118	118	C	705	707	Right-handed 310
Helix 119	119	C	711	724	Right-handed alpha
Helix 120	120	F	367	372	Right-handed alpha

There are 15 sheets in PDB entry 5R1R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	253	257	parallel
Strand 3	A	302	307	parallel
Strand 4	A	334	339	parallel
Strand 5	A	412	416	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	391	394	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	514	518	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	652	655	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	A	732	734	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	207	first strand
Strand 2	B	464	468	anti-parallel
Strand 3	B	514	518	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	253	257	parallel
Strand 3	B	302	307	parallel
Strand 4	B	334	339	parallel
Strand 5	B	412	416	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	391	394	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	652	655	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	699	first strand
Strand 2	B	732	734	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	253	257	parallel
Strand 3	C	302	307	parallel
Strand 4	C	334	339	parallel
Strand 5	C	412	416	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	391	394	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	468	first strand
Strand 2	C	514	518	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	645	first strand
Strand 2	C	652	655	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	699	first strand
Strand 2	C	732	734	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5R1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5R1R