Analysis of interatomic Contacts of Structural Units in PDB entry:
5R5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5R5T entry

There is 1 chain in PDB entry 5R5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 2194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5R5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1983 1990Right-handed alpha
Helix 2
AA2
A
2003 2005Right-handed 310
Helix 3
AA3
A
2017 2021Right-handed 310
Helix 4
AA4
A
2039 2046Right-handed alpha
Helix 5
AA5
A
2057 2066Right-handed alpha
Helix 6
AA6
A
2094 2098Right-handed 310
Helix 7
AA7
A
2114 2118Right-handed 310
Helix 8
AA8
A
2136 2141Right-handed alpha
Helix 9
AA9
A
2170 2174Right-handed alpha
Helix 10
AB1
A
2190 2194Right-handed 310
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There are 3 sheets in PDB entry 5R5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1996 2001first strand
Strand 2
A
2009 2015anti-parallel
Strand 3
A
2023 2029anti-parallel
Strand 4
A
2054 2055anti-parallel
Strand 5
A
2047 2048anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1996 2001first strand
Strand 2
A
2009 2015anti-parallel
Strand 3
A
2023 2029anti-parallel
Strand 4
A
2181 2188anti-parallel
Strand 5
A
2070 2078anti-parallel
Strand 6
A
2081 2092anti-parallel
Strand 7
A
2101 2108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2152 2153first strand
Strand 2
A
2168 2169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il