Analysis of interatomic Contacts of Structural Units in PDB entry:
5RB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RB6 entry

There are 2 chains in PDB entry 5RB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1378THR 1717
B
 MET 1379ASN 1725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5RB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1400 1411Right-handed alpha
Helix 2
AA2
A
1419 1424Right-handed 310
Helix 3
AA3
A
1425 1429Right-handed 310
Helix 4
AA4
A
1430 1439Right-handed alpha
Helix 5
AA5
A
1459 1464Right-handed alpha
Helix 6
AA6
A
1468 1472Right-handed 310
Helix 7
AA7
A
1493 1498Right-handed alpha
Helix 8
AA8
A
1498 1507Right-handed alpha
Helix 9
AA9
A
1511 1516Right-handed alpha
Helix 10
AB1
A
1523 1527Right-handed 310
Helix 11
AB2
A
1549 1554Right-handed 310
Helix 12
AB3
A
1582 1593Right-handed alpha
Helix 13
AB4
A
1596 1605Right-handed alpha
Helix 14
AB5
A
1618 1620Right-handed 310
Helix 15
AB6
A
1621 1636Right-handed alpha
Helix 16
AB7
A
1655 1667Right-handed alpha
Helix 17
AB8
A
1706 1714Right-handed 310
Helix 18
AB9
B
1401 1411Right-handed alpha
Helix 19
AC1
B
1419 1424Right-handed 310
Helix 20
AC2
B
1425 1429Right-handed 310
Helix 21
AC3
B
1430 1439Right-handed alpha
Helix 22
AC4
B
1459 1464Right-handed alpha
Helix 23
AC5
B
1468 1472Right-handed 310
Helix 24
AC6
B
1493 1498Right-handed alpha
Helix 25
AC7
B
1498 1507Right-handed alpha
Helix 26
AC8
B
1511 1516Right-handed alpha
Helix 27
AC9
B
1549 1554Right-handed 310
Helix 28
AD1
B
1582 1593Right-handed alpha
Helix 29
AD2
B
1596 1603Right-handed alpha
Helix 30
AD3
B
1618 1620Right-handed 310
Helix 31
AD4
B
1621 1636Right-handed alpha
Helix 32
AD5
B
1655 1667Right-handed alpha
Helix 33
AD6
B
1706 1708Right-handed 310
Helix 34
AD7
B
1709 1725Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5RB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1382 1385first strand
Strand 2
A
1390 1393anti-parallel
Strand 3
A
1415 1417parallel
Strand 4
A
1680 1683anti-parallel
Strand 5
A
1565 1574anti-parallel
Strand 6
A
1696 1704anti-parallel
Strand 7
A
1539 1543anti-parallel
Strand 8
A
1483 1485anti-parallel
Strand 9
A
1442 1447anti-parallel
Strand 10
A
1453 1458anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1557 1560first strand
Strand 2
A
1689 1693anti-parallel
Strand 3
A
1610 1616anti-parallel
Strand 4
A
1671 1676anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1382 1385first strand
Strand 2
B
1390 1393anti-parallel
Strand 3
B
1415 1417parallel
Strand 4
B
1680 1683anti-parallel
Strand 5
B
1565 1574anti-parallel
Strand 6
B
1696 1704anti-parallel
Strand 7
B
1539 1543anti-parallel
Strand 8
B
1483 1485anti-parallel
Strand 9
B
1442 1447anti-parallel
Strand 10
B
1453 1458anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1557 1560first strand
Strand 2
B
1689 1693anti-parallel
Strand 3
B
1610 1616anti-parallel
Strand 4
B
1671 1676anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il