Analysis of interatomic Contacts of Structural Units in PDB entry:
5RFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RFM entry

There is 1 chain in PDB entry 5RFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5RFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
53 60Right-handed alpha
Helix 5
AA5
A
61 64Right-handed 310
Helix 6
AA6
A
200 214Right-handed alpha
Helix 7
AA7
A
226 237Right-handed alpha
Helix 8
AA8
A
243 250Right-handed alpha
Helix 9
AA9
A
250 258Right-handed alpha
Helix 10
AB1
A
260 275Right-handed alpha
Helix 11
AB2
A
292 301Right-handed alpha
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There are 3 sheets in PDB entry 5RFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
35 39anti-parallel
Strand 6
A
86 91anti-parallel
Strand 7
A
77 83anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 166parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
121 129anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 166parallel
Strand 3
A
172 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il