Analysis of interatomic Contacts of Structural Units in PDB entry:
5RVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RVX entry

There are 2 chains in PDB entry 5RVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 53ALA 919
B
 ARG 49GLU 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5RVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 67Right-handed alpha
Helix 2
AA2
A
68 71Right-handed 310
Helix 3
AA3
A
86 94Right-handed alpha
Helix 4
AA4
A
114 127Right-handed alpha
Helix 5
AA5
A
139 155Right-handed alpha
Helix 6
AA6
A
159 184Right-handed alpha
Helix 7
AA7
A
197 213Right-handed alpha
Helix 8
AA8
A
225 233Right-handed alpha
Helix 9
AA9
A
237 246Right-handed alpha
Helix 10
AB1
A
261 265Right-handed 310
Helix 11
AB2
A
292 308Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
333 339Right-handed alpha
Helix 14
AB5
A
340 349Right-handed alpha
Helix 15
AB6
A
375 377Right-handed 310
Helix 16
AB7
A
382 391Right-handed 310
Helix 17
AB8
A
401 420Right-handed alpha
Helix 18
AB9
A
440 444Right-handed 310
Helix 19
AC1
A
445 455Right-handed alpha
Helix 20
AC2
A
457 469Right-handed alpha
Helix 21
AC3
A
473 495Right-handed alpha
Helix 22
AC4
A
527 538Right-handed alpha
Helix 23
AC5
A
548 554Right-handed alpha
Helix 24
AC6
A
554 566Right-handed alpha
Helix 25
AC7
A
570 585Right-handed alpha
Helix 26
AC8
A
618 623Right-handed 310
Helix 27
AC9
A
640 654Right-handed alpha
Helix 28
AD1
A
665 671Right-handed 310
Helix 29
AD2
A
672 679Right-handed alpha
Helix 30
AD3
A
682 688Right-handed alpha
Helix 31
AD4
A
712 720Right-handed alpha
Helix 32
AD5
A
741 755Right-handed alpha
Helix 33
AD6
A
767 771Right-handed 310
Helix 34
AD7
A
778 783Right-handed 310
Helix 35
AD8
A
798 802Right-handed 310
Helix 36
AD9
A
811 822Right-handed alpha
Helix 37
AE1
A
823 828Right-handed 310
Helix 38
AE2
A
842 851Right-handed alpha
Helix 39
AE3
A
852 854Right-handed 310
Helix 40
AE4
A
871 884Right-handed alpha
Helix 41
AE5
A
902 918Right-handed alpha
Helix 42
AE6
B
53 67Right-handed alpha
Helix 43
AE7
B
68 71Right-handed 310
Helix 44
AE8
B
86 94Right-handed alpha
Helix 45
AE9
B
114 127Right-handed alpha
Helix 46
AF1
B
139 156Right-handed alpha
Helix 47
AF2
B
159 184Right-handed alpha
Helix 48
AF3
B
197 213Right-handed alpha
Helix 49
AF4
B
225 233Right-handed alpha
Helix 50
AF5
B
237 246Right-handed alpha
Helix 51
AF6
B
261 265Right-handed 310
Helix 52
AF7
B
292 308Right-handed alpha
Helix 53
AF8
B
310 314Right-handed 310
Helix 54
AF9
B
333 339Right-handed alpha
Helix 55
AG1
B
340 349Right-handed alpha
Helix 56
AG2
B
375 377Right-handed 310
Helix 57
AG3
B
382 391Right-handed 310
Helix 58
AG4
B
401 420Right-handed alpha
Helix 59
AG5
B
440 444Right-handed 310
Helix 60
AG6
B
445 455Right-handed alpha
Helix 61
AG7
B
457 469Right-handed alpha
Helix 62
AG8
B
473 494Right-handed alpha
Helix 63
AG9
B
527 538Right-handed alpha
Helix 64
AH1
B
548 554Right-handed alpha
Helix 65
AH2
B
554 566Right-handed alpha
Helix 66
AH3
B
570 585Right-handed alpha
Helix 67
AH4
B
618 623Right-handed 310
Helix 68
AH5
B
640 654Right-handed alpha
Helix 69
AH6
B
665 671Right-handed 310
Helix 70
AH7
B
672 679Right-handed alpha
Helix 71
AH8
B
682 688Right-handed alpha
Helix 72
AH9
B
712 720Right-handed alpha
Helix 73
AI1
B
741 755Right-handed alpha
Helix 74
AI2
B
767 771Right-handed 310
Helix 75
AI3
B
778 783Right-handed 310
Helix 76
AI4
B
798 802Right-handed 310
Helix 77
AI5
B
811 822Right-handed alpha
Helix 78
AI6
B
823 828Right-handed 310
Helix 79
AI7
B
842 851Right-handed alpha
Helix 80
AI8
B
871 884Right-handed alpha
Helix 81
AI9
B
902 918Right-handed alpha
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There are 11 sheets in PDB entry 5RVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
112 113anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
423 428parallel
Strand 4
A
359 365parallel
Strand 5
A
325 332parallel
Strand 6
A
216 220parallel
Strand 7
A
278 283parallel
Strand 8
A
268 272anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
372 373anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 635first strand
Strand 2
A
588 593parallel
Strand 3
A
657 662parallel
Strand 4
A
694 698parallel
Strand 5
A
761 765parallel
Strand 6
A
735 737parallel
Strand 7
A
837 839anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 609first strand
Strand 2
A
616 617anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 792first strand
Strand 2
A
830 835anti-parallel
Strand 3
A
804 808parallel
Strand 4
A
858 866parallel
Strand 5
A
888 892parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
393 398anti-parallel
Strand 3
B
423 428parallel
Strand 4
B
359 365parallel
Strand 5
B
325 332parallel
Strand 6
B
216 220parallel
Strand 7
B
279 283parallel
Strand 8
B
268 271anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
372 373anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
631 635first strand
Strand 2
B
588 593parallel
Strand 3
B
657 662parallel
Strand 4
B
694 698parallel
Strand 5
B
761 765parallel
Strand 6
B
735 737parallel
Strand 7
B
837 839anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 609first strand
Strand 2
B
616 617anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
791 792first strand
Strand 2
B
830 835anti-parallel
Strand 3
B
804 808parallel
Strand 4
B
858 866parallel
Strand 5
B
888 892parallel
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