Analysis of interatomic Contacts of Structural Units in PDB entry:
5RY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RY9 entry

There is 1 chain in PDB entry 5RY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 397GLN 856
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5RY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
421 426Right-handed alpha
Helix 2
AA2
A
435 439Right-handed 310
Helix 3
AA3
A
456 473Right-handed alpha
Helix 4
AA4
A
495 498Right-handed 310
Helix 5
AA5
A
544 546Right-handed 310
Helix 6
AA6
A
547 562Right-handed alpha
Helix 7
AA7
A
594 596Right-handed 310
Helix 8
AA8
A
597 607Right-handed alpha
Helix 9
AA9
A
610 615Right-handed alpha
Helix 10
AB1
A
617 625Right-handed alpha
Helix 11
AB2
A
658 662Right-handed 310
Helix 12
AB3
A
792 797Right-handed alpha
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There are 4 sheets in PDB entry 5RY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
684 691anti-parallel
Strand 3
A
703 710anti-parallel
Strand 4
A
402 411anti-parallel
Strand 5
A
445 451parallel
Strand 6
A
487 493anti-parallel
Strand 7
A
477 484anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 510first strand
Strand 2
A
521 529anti-parallel
Strand 3
A
532 540anti-parallel
Strand 4
A
580 586parallel
Strand 5
A
672 678anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 769first strand
Strand 2
A
775 780anti-parallel
Strand 3
A
729 739anti-parallel
Strand 4
A
841 853anti-parallel
Strand 5
A
830 838anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
747 752anti-parallel
Strand 3
A
800 807anti-parallel
Strand 4
A
813 820anti-parallel
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