Analysis of interatomic Contacts of Structural Units in PDB entry:
5RYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RYP entry

There is 1 chain in PDB entry 5RYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 107LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5RYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 143Right-handed alpha
Helix 2
AA2
A
147 149Right-handed 310
Helix 3
AA3
A
171 176Right-handed alpha
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
198 215Right-handed alpha
Helix 6
AA6
A
221 238Right-handed alpha
Helix 7
AA7
A
241 245Right-handed 310
Helix 8
AA8
A
260 274Right-handed alpha
Helix 9
AA9
A
278 291Right-handed alpha
Helix 10
AB1
A
335 337Right-handed 310
Helix 11
AB2
A
369 389Right-handed alpha
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There are 2 sheets in PDB entry 5RYP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
181 186parallel
Strand 4
A
151 156anti-parallel
Strand 5
A
162 164anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
319 323anti-parallel
Strand 3
A
310 316anti-parallel
Strand 4
A
299 305anti-parallel
Strand 5
A
361 366anti-parallel
Strand 6
A
346 351anti-parallel
Strand 7
A
341 343anti-parallel
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