Analysis of interatomic Contacts of Structural Units in PDB entry:
5S7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5S7T entry

There are 2 chains in PDB entry 5S7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 202ASP 499
B
 ALA 205ILE 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5S7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 255Right-handed alpha
Helix 2
AA2
A
290 297Right-handed alpha
Helix 3
AA3
A
301 321Right-handed alpha
Helix 4
AA4
A
338 340Right-handed 310
Helix 5
AA5
A
378 382Right-handed 310
Helix 6
AA6
A
383 388Right-handed alpha
Helix 7
AA7
A
395 416Right-handed alpha
Helix 8
AA8
A
440 449Right-handed alpha
Helix 9
AA9
A
458 463Right-handed 310
Helix 10
AB1
A
464 478Right-handed alpha
Helix 11
AB2
A
481 485Right-handed 310
Helix 12
AB3
A
487 497Right-handed alpha
Helix 13
AB4
B
238 240Right-handed 310
Helix 14
AB5
B
241 253Right-handed alpha
Helix 15
AB6
B
254 258Right-handed 310
Helix 16
AB7
B
290 298Right-handed alpha
Helix 17
AB8
B
301 321Right-handed alpha
Helix 18
AB9
B
338 340Right-handed 310
Helix 19
AC1
B
378 382Right-handed 310
Helix 20
AC2
B
383 388Right-handed alpha
Helix 21
AC3
B
395 416Right-handed alpha
Helix 22
AC4
B
440 449Right-handed alpha
Helix 23
AC5
B
458 463Right-handed 310
Helix 24
AC6
B
464 476Right-handed alpha
Helix 25
AC7
B
481 485Right-handed 310
Helix 26
AC8
B
487 498Right-handed alpha
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There are 6 sheets in PDB entry 5S7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 217first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
277 283anti-parallel
Strand 5
A
265 272anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
359 360anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
350 352anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 217first strand
Strand 2
B
220 227anti-parallel
Strand 3
B
230 236anti-parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
265 273anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
B
359 362anti-parallel
Strand 3
B
367 369anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
350 352anti-parallel
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