Analysis of interatomic Contacts of Structural Units in PDB entry:
5S9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5S9V entry

There are 2 chains in PDB entry 5S9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	PRO 488
B	LYS 3	GLU 485

There are 35 helices in PDB entry 5S9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	28	Right-handed alpha
Helix 2	AA2	A	50	56	Right-handed alpha
Helix 3	AA3	A	56	76	Right-handed alpha
Helix 4	AA4	A	77	79	Right-handed 310
Helix 5	AA5	A	84	88	Right-handed 310
Helix 6	AA6	A	91	117	Right-handed alpha
Helix 7	AA7	A	171	175	Right-handed 310
Helix 8	AA8	A	177	182	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	231	245	Right-handed alpha
Helix 11	AB2	A	291	299	Right-handed 310
Helix 12	AB3	A	326	330	Right-handed 310
Helix 13	AB4	A	334	350	Right-handed alpha
Helix 14	AB5	A	378	386	Right-handed alpha
Helix 15	AB6	A	398	405	Right-handed alpha
Helix 16	AB7	A	433	447	Right-handed alpha
Helix 17	AB8	A	450	456	Right-handed alpha
Helix 18	AB9	A	464	470	Right-handed 310
Helix 19	AC1	B	13	27	Right-handed alpha
Helix 20	AC2	B	50	56	Right-handed alpha
Helix 21	AC3	B	56	77	Right-handed alpha
Helix 22	AC4	B	84	88	Right-handed 310
Helix 23	AC5	B	91	117	Right-handed alpha
Helix 24	AC6	B	171	175	Right-handed 310
Helix 25	AC7	B	177	182	Right-handed alpha
Helix 26	AC8	B	197	211	Right-handed alpha
Helix 27	AC9	B	231	245	Right-handed alpha
Helix 28	AD1	B	291	299	Right-handed 310
Helix 29	AD2	B	326	330	Right-handed 310
Helix 30	AD3	B	334	352	Right-handed alpha
Helix 31	AD4	B	378	386	Right-handed alpha
Helix 32	AD5	B	398	405	Right-handed alpha
Helix 33	AD6	B	433	447	Right-handed alpha
Helix 34	AD7	B	450	457	Right-handed alpha
Helix 35	AD8	B	464	470	Right-handed 310

There are 14 sheets in PDB entry 5S9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	31	35	parallel
Strand 3	A	4	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	134	138	anti-parallel
Strand 6	A	126	131	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	31	35	parallel
Strand 3	A	4	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	322	324	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	B	89	90	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	B	81	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	287	289	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	216	220	parallel
Strand 3	A	190	194	parallel
Strand 4	A	280	283	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	275	278	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	372	376	anti-parallel
Strand 3	A	424	430	anti-parallel
Strand 4	A	411	418	anti-parallel
Strand 5	A	388	396	anti-parallel
Strand 6	A	476	479	anti-parallel
Strand 7	A	482	484	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	31	35	parallel
Strand 3	B	4	10	parallel
Strand 4	B	147	158	parallel
Strand 5	B	134	138	anti-parallel
Strand 6	B	126	131	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	31	35	parallel
Strand 3	B	4	10	parallel
Strand 4	B	147	158	parallel
Strand 5	B	322	324	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	287	289	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	216	221	parallel
Strand 3	B	190	194	parallel
Strand 4	B	280	283	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	275	278	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	411	418	anti-parallel
Strand 5	B	388	396	anti-parallel
Strand 6	B	476	479	anti-parallel
Strand 7	B	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5S9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5S9V