Analysis of interatomic Contacts of Structural Units in PDB entry:
5SD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SD8 entry

There is 1 chain in PDB entry 5SD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ASP 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5SD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
55 61Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
93 101Right-handed alpha
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
118 128Right-handed alpha
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There are 3 sheets in PDB entry 5SD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
72 76parallel
Strand 3
A
48 54parallel
Strand 4
A
110 115parallel
Strand 5
A
5 12parallel
Strand 6
A
130 139parallel
Strand 7
A
176 187anti-parallel
Strand 8
A
158 160anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
72 76parallel
Strand 3
A
48 54parallel
Strand 4
A
110 115parallel
Strand 5
A
5 12parallel
Strand 6
A
130 139parallel
Strand 7
A
176 187anti-parallel
Strand 8
A
171 173anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
147 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il