Analysis of interatomic Contacts of Structural Units in PDB entry:
5SIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SIM entry

There are 2 chains in PDB entry 5SIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 459LEU 508
A
 ARG 510ALA 772
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5SIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
465 472Right-handed alpha
Helix 2
AA2
A
482 484Right-handed 310
Helix 3
AA3
A
485 498Right-handed alpha
Helix 4
AA4
A
504 518Right-handed alpha
Helix 5
AA5
A
526 544Right-handed alpha
Helix 6
AA6
A
549 563Right-handed alpha
Helix 7
AA7
A
571 579Right-handed alpha
Helix 8
AA8
A
580 586Right-handed alpha
Helix 9
AA9
A
589 604Right-handed alpha
Helix 10
AB1
A
615 633Right-handed alpha
Helix 11
AB2
A
634 651Right-handed alpha
Helix 12
AB3
A
658 675Right-handed alpha
Helix 13
AB4
A
676 680Right-handed 310
Helix 14
AB5
A
681 706Right-handed alpha
Helix 15
AB6
A
711 720Right-handed 310
Helix 16
AB7
A
721 733Right-handed alpha
Helix 17
AB8
A
733 745Right-handed alpha
Helix 18
AB9
A
748 767Right-handed alpha
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There are no sheets in PDB entry 5SIM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il