Analysis of interatomic Contacts of Structural Units in PDB entry:
5SLG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SLG entry

There is 1 chain in PDB entry 5SLG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PRO 24	THR 524

There are 15 helices in PDB entry 5SLG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	35	39	Right-handed 310
Helix 2	AA2	D	50	58	Right-handed alpha
Helix 3	AA3	D	75	82	Right-handed alpha
Helix 4	AA4	D	159	175	Right-handed alpha
Helix 5	AA5	D	189	194	Right-handed alpha
Helix 6	AA6	D	195	197	Right-handed 310
Helix 7	AA7	D	245	248	Right-handed 310
Helix 8	AA8	D	252	258	Right-handed alpha
Helix 9	AA9	D	269	287	Right-handed alpha
Helix 10	AB1	D	301	325	Right-handed alpha
Helix 11	AB2	D	362	368	Right-handed alpha
Helix 12	AB3	D	432	437	Right-handed 310
Helix 13	AB4	D	475	480	Right-handed alpha
Helix 14	AB5	D	484	504	Right-handed alpha
Helix 15	AB6	D	515	523	Right-handed 310

There are 5 sheets in PDB entry 5SLG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	116	120	parallel
Strand 3	D	107	111	anti-parallel
Strand 4	D	86	93	anti-parallel
Strand 5	D	182	185	parallel
Strand 6	D	240	243	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	235	237	parallel
Strand 3	D	216	218	anti-parallel
Strand 4	D	223	225	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	328	333	parallel
Strand 3	D	381	385	parallel
Strand 4	D	396	401	parallel
Strand 5	D	506	511	anti-parallel
Strand 6	D	439	441	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	418	421	anti-parallel
Strand 3	D	425	428	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	447	first strand
Strand 2	D	473	474	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SLG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SLG