Analysis of interatomic Contacts of Structural Units in PDB entry:
5SOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SOB entry

There are 2 chains in PDB entry 5SOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 413
B
 SER 2ALA 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5SOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
72 90Right-handed alpha
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
127 130Right-handed 310
Helix 8
AA8
A
141 152Right-handed alpha
Helix 9
AA9
A
162 164Right-handed 310
Helix 10
AB1
A
165 180Right-handed alpha
Helix 11
AB2
A
196 206Right-handed alpha
Helix 12
AB3
A
215 219Right-handed 310
Helix 13
AB4
A
244 250Right-handed alpha
Helix 14
AB5
A
277 292Right-handed alpha
Helix 15
AB6
A
294 298Right-handed 310
Helix 16
AB7
A
308 324Right-handed alpha
Helix 17
AB8
A
325 329Right-handed 310
Helix 18
AB9
A
335 340Right-handed alpha
Helix 19
AC1
A
342 344Right-handed 310
Helix 20
AC2
A
345 361Right-handed alpha
Helix 21
AC3
B
20 30Right-handed alpha
Helix 22
AC4
B
58 62Right-handed 310
Helix 23
AC5
B
64 70Right-handed alpha
Helix 24
AC6
B
72 90Right-handed alpha
Helix 25
AC7
B
97 99Right-handed 310
Helix 26
AC8
B
111 126Right-handed alpha
Helix 27
AC9
B
127 130Right-handed 310
Helix 28
AD1
B
141 152Right-handed alpha
Helix 29
AD2
B
162 164Right-handed 310
Helix 30
AD3
B
165 180Right-handed alpha
Helix 31
AD4
B
196 206Right-handed alpha
Helix 32
AD5
B
215 219Right-handed 310
Helix 33
AD6
B
244 250Right-handed alpha
Helix 34
AD7
B
277 291Right-handed alpha
Helix 35
AD8
B
294 298Right-handed 310
Helix 36
AD9
B
308 324Right-handed alpha
Helix 37
AE1
B
325 327Right-handed 310
Helix 38
AE2
B
335 340Right-handed alpha
Helix 39
AE3
B
342 344Right-handed 310
Helix 40
AE4
B
345 361Right-handed alpha
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There are 6 sheets in PDB entry 5SOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
101 106parallel
Strand 3
A
185 192parallel
Strand 4
A
235 243anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
403 410anti-parallel
Strand 8
A
392 399anti-parallel
Strand 9
A
300 302parallel
Strand 10
A
331 333parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
50 52anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
386 387anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
101 106parallel
Strand 3
B
185 192parallel
Strand 4
B
235 243anti-parallel
Strand 5
B
6 14anti-parallel
Strand 6
B
256 265anti-parallel
Strand 7
B
403 410anti-parallel
Strand 8
B
392 399anti-parallel
Strand 9
B
300 302parallel
Strand 10
B
331 333parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
50 52anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
386 387anti-parallel
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