Analysis of interatomic Contacts of Structural Units in PDB entry:
5STD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5STD entry

There are 3 chains in PDB entry 5STD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9LYS 172
B
 GLY 9LYS 172
C
 GLY 9LYS 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5STD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
11
A
13 32Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
13
A
63 70Right-handed alpha
Helix 4
4
A
158 161Right-handed alpha
Helix 5
10
A
163 169Right-handed alpha
Helix 6
11
B
13 32Right-handed alpha
Helix 7
12
B
35 39Right-handed alpha
Helix 8
13
B
63 70Right-handed alpha
Helix 9
14
B
158 160Right-handed 310
Helix 10
10
B
163 169Right-handed alpha
Helix 11
11
C
13 32Right-handed alpha
Helix 12
12
C
35 39Right-handed alpha
Helix 13
13
C
63 70Right-handed alpha
Helix 14
14
C
158 160Right-handed 310
Helix 15
15
C
163 170Right-handed alpha
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There are 11 sheets in PDB entry 5STD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
146 156parallel
Strand 4
A
121 136anti-parallel
Strand 5
A
99 113anti-parallel
Strand 6
A
81 87anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
141 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
99 104anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
56 58anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 87first strand
Strand 2
B
99 113anti-parallel
Strand 3
B
121 138anti-parallel
Strand 4
B
141 144anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 96first strand
Strand 2
B
99 104anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 134first strand
Strand 2
B
146 156anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 50first strand
Strand 2
C
56 58anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 87first strand
Strand 2
C
99 113anti-parallel
Strand 3
C
121 138anti-parallel
Strand 4
C
141 144anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 96first strand
Strand 2
C
99 104anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 134first strand
Strand 2
C
146 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il