Analysis of interatomic Contacts of Structural Units in PDB entry:
5SUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SUH entry

There are 3 chains in PDB entry 5SUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10HIS 218
B
 ARG 10HIS 218
C
 ARG 10HIS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 5SUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed alpha
Helix 2
AA2
A
54 56Right-handed 310
Helix 3
AA3
A
57 69Right-handed alpha
Helix 4
AA4
A
92 108Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
129 137Right-handed alpha
Helix 7
AA7
A
158 160Right-handed 310
Helix 8
AA8
A
161 173Right-handed alpha
Helix 9
AA9
A
195 213Right-handed alpha
Helix 10
AB1
B
54 56Right-handed 310
Helix 11
AB2
B
57 69Right-handed alpha
Helix 12
AB3
B
92 108Right-handed alpha
Helix 13
AB4
B
110 114Right-handed 310
Helix 14
AB5
B
129 139Right-handed alpha
Helix 15
AB6
B
158 160Right-handed 310
Helix 16
AB7
B
161 173Right-handed alpha
Helix 17
AB8
B
195 212Right-handed alpha
Helix 18
AB9
C
23 30Right-handed alpha
Helix 19
AC1
C
54 56Right-handed 310
Helix 20
AC2
C
57 69Right-handed alpha
Helix 21
AC3
C
92 108Right-handed alpha
Helix 22
AC4
C
110 114Right-handed 310
Helix 23
AC5
C
129 138Right-handed alpha
Helix 24
AC6
C
158 160Right-handed 310
Helix 25
AC7
C
161 173Right-handed alpha
Helix 26
AC8
C
195 212Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5SUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
73 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 125first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
73 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 125first strand
Strand 2
B
150 157anti-parallel
Strand 3
B
188 194anti-parallel
Strand 4
B
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 19first strand
Strand 2
C
46 53anti-parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
73 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 125first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
188 194anti-parallel
Strand 4
C
177 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il