Analysis of interatomic Contacts of Structural Units in PDB entry:
5SUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SUP entry

There are 9 chains in PDB entry 5SUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 62	LEU 444
B	THR 62	LEU 444
C	PHE 64	LEU 444
G	ALA 208	GLU 224
H	ALA 208	GLU 224
I	LYS 210	GLU 224
D	U 1	U 6
E	U 1	U 6
F	U 1	U 6

There are 62 helices in PDB entry 5SUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	68	Right-handed 310
Helix 2	AA2	A	70	80	Right-handed alpha
Helix 3	AA3	A	86	97	Right-handed alpha
Helix 4	AA4	A	112	124	Right-handed alpha
Helix 5	AA5	A	139	154	Right-handed alpha
Helix 6	AA6	A	170	180	Right-handed alpha
Helix 7	AA7	A	191	200	Right-handed alpha
Helix 8	AA8	A	216	223	Right-handed alpha
Helix 9	AA9	A	223	235	Right-handed alpha
Helix 10	AB1	A	254	260	Right-handed alpha
Helix 11	AB2	A	272	277	Right-handed 310
Helix 12	AB3	A	289	291	Right-handed 310
Helix 13	AB4	A	292	304	Right-handed alpha
Helix 14	AB5	A	315	329	Right-handed alpha
Helix 15	AB6	A	341	354	Right-handed alpha
Helix 16	AB7	A	364	367	Right-handed 310
Helix 17	AB8	A	386	395	Right-handed alpha
Helix 18	AB9	A	396	397	Right-handed 310
Helix 19	AC1	A	398	402	Right-handed 310
Helix 20	AC2	A	412	427	Right-handed alpha
Helix 21	AC3	A	440	444	Right-handed 310
Helix 22	AC4	B	63	68	Right-handed 310
Helix 23	AC5	B	70	80	Right-handed alpha
Helix 24	AC6	B	86	98	Right-handed alpha
Helix 25	AC7	B	112	124	Right-handed alpha
Helix 26	AC8	B	139	154	Right-handed alpha
Helix 27	AC9	B	170	180	Right-handed alpha
Helix 28	AD1	B	191	201	Right-handed alpha
Helix 29	AD2	B	216	223	Right-handed alpha
Helix 30	AD3	B	223	235	Right-handed alpha
Helix 31	AD4	B	254	260	Right-handed alpha
Helix 32	AD5	B	272	277	Right-handed 310
Helix 33	AD6	B	289	291	Right-handed 310
Helix 34	AD7	B	292	304	Right-handed alpha
Helix 35	AD8	B	315	329	Right-handed alpha
Helix 36	AD9	B	341	354	Right-handed alpha
Helix 37	AE1	B	364	367	Right-handed 310
Helix 38	AE2	B	386	395	Right-handed alpha
Helix 39	AE3	B	412	426	Right-handed alpha
Helix 40	AE4	B	439	444	Right-handed 310
Helix 41	AE5	C	64	68	Right-handed 310
Helix 42	AE6	C	70	80	Right-handed alpha
Helix 43	AE7	C	86	97	Right-handed alpha
Helix 44	AE8	C	112	124	Right-handed alpha
Helix 45	AE9	C	139	154	Right-handed alpha
Helix 46	AF1	C	170	180	Right-handed alpha
Helix 47	AF2	C	191	200	Right-handed alpha
Helix 48	AF3	C	216	223	Right-handed alpha
Helix 49	AF4	C	223	235	Right-handed alpha
Helix 50	AF5	C	254	260	Right-handed alpha
Helix 51	AF6	C	272	277	Right-handed 310
Helix 52	AF7	C	289	291	Right-handed 310
Helix 53	AF8	C	292	304	Right-handed alpha
Helix 54	AF9	C	315	329	Right-handed alpha
Helix 55	AG1	C	341	354	Right-handed alpha
Helix 56	AG2	C	364	367	Right-handed 310
Helix 57	AG3	C	386	395	Right-handed alpha
Helix 58	AG4	C	412	427	Right-handed alpha
Helix 59	AG5	C	439	444	Right-handed 310
Helix 60	AG6	G	211	223	Right-handed alpha
Helix 61	AG7	H	211	223	Right-handed alpha
Helix 62	AG8	I	211	224	Right-handed alpha

There are 6 sheets in PDB entry 5SUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	187	190	parallel
Strand 3	A	133	136	parallel
Strand 4	A	211	215	parallel
Strand 5	A	242	247	parallel
Strand 6	A	102	105	parallel
Strand 7	A	266	268	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	359	362	parallel
Strand 3	A	308	312	parallel
Strand 4	A	375	380	parallel
Strand 5	A	404	410	parallel
Strand 6	A	281	287	parallel
Strand 7	A	431	432	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	187	190	parallel
Strand 3	B	133	136	parallel
Strand 4	B	211	215	parallel
Strand 5	B	242	247	parallel
Strand 6	B	102	105	parallel
Strand 7	B	266	268	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	359	362	parallel
Strand 3	B	308	312	parallel
Strand 4	B	375	380	parallel
Strand 5	B	404	410	parallel
Strand 6	B	281	287	parallel
Strand 7	B	431	432	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	187	190	parallel
Strand 3	C	133	136	parallel
Strand 4	C	211	215	parallel
Strand 5	C	242	247	parallel
Strand 6	C	102	105	parallel
Strand 7	C	266	268	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	359	362	parallel
Strand 3	C	308	312	parallel
Strand 4	C	375	380	parallel
Strand 5	C	404	410	parallel
Strand 6	C	281	287	parallel
Strand 7	C	431	432	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SUP