Analysis of interatomic Contacts of Structural Units in PDB entry:
5SV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SV3 entry

There are 4 chains in PDB entry 5SV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 126
B
 GLN 5PHE 181
C
 VAL 2SER 126
D
 GLN 5PHE 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5SV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
109 111Right-handed 310
Helix 5
AA5
B
17 30Right-handed alpha
Helix 6
AA6
B
52 55Right-handed 310
Helix 7
AA7
B
97 105Right-handed alpha
Helix 8
AA8
B
122 131Right-handed alpha
Helix 9
AA9
B
133 137Right-handed 310
Helix 10
AB1
B
140 154Right-handed alpha
Helix 11
AB2
B
160 175Right-handed alpha
Helix 12
AB3
B
175 181Right-handed alpha
Helix 13
AB4
C
28 32Right-handed 310
Helix 14
AB5
C
62 65Right-handed 310
Helix 15
AB6
C
87 91Right-handed 310
Helix 16
AB7
C
109 111Right-handed 310
Helix 17
AB8
D
17 30Right-handed alpha
Helix 18
AB9
D
52 55Right-handed 310
Helix 19
AC1
D
97 105Right-handed alpha
Helix 20
AC2
D
122 131Right-handed alpha
Helix 21
AC3
D
133 137Right-handed 310
Helix 22
AC4
D
140 154Right-handed alpha
Helix 23
AC5
D
160 175Right-handed alpha
Helix 24
AC6
D
175 181Right-handed alpha
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There are 8 sheets in PDB entry 5SV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
120 125parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
120 125parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
113 114anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
B
113 117anti-parallel
Strand 3
B
89 92parallel
Strand 4
B
81 86anti-parallel
Strand 5
B
69 75anti-parallel
Strand 6
B
57 63anti-parallel
Strand 7
B
8 12parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
120 125parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
120 125parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
113 114anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
D
113 117anti-parallel
Strand 3
D
89 92parallel
Strand 4
D
81 86anti-parallel
Strand 5
D
69 75anti-parallel
Strand 6
D
57 63anti-parallel
Strand 7
D
8 12parallel
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