Analysis of interatomic Contacts of Structural Units in PDB entry:
5SV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SV6 entry

There is 1 chain in PDB entry 5SV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 36LEU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5SV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 68Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
89 92Right-handed 310
Helix 5
AA5
A
135 140Right-handed alpha
Helix 6
AA6
A
150 159Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
186 196Right-handed alpha
Helix 9
AA9
A
206 215Right-handed alpha
Helix 10
AB1
A
251 265Right-handed alpha
Helix 11
AB2
A
265 277Right-handed alpha
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There are 4 sheets in PDB entry 5SV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
37 42parallel
Strand 3
A
96 101parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
114 123anti-parallel
Strand 6
A
201 205anti-parallel
Strand 7
A
144 145parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
114 123anti-parallel
Strand 4
A
220 224anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
49 50anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
237 238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il