Analysis of interatomic Contacts of Structural Units in PDB entry:
5SV7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SV7 entry

There are 4 chains in PDB entry 5SV7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 103	SER 400
B	SER 104	SER 400
C	SER 104	VAL 401
D	SER 104	SER 400

There are 8 helices in PDB entry 5SV7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	376	382	Right-handed alpha
Helix 2	AA2	B	177	182	Right-handed alpha
Helix 3	AA3	B	313	316	Right-handed 310
Helix 4	AA4	B	376	385	Right-handed alpha
Helix 5	AA5	C	375	384	Right-handed alpha
Helix 6	AA6	D	119	123	Right-handed 310
Helix 7	AA7	D	178	183	Right-handed alpha
Helix 8	AA8	D	372	383	Right-handed alpha

There are 23 sheets in PDB entry 5SV7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	104	110	anti-parallel
Strand 3	A	339	346	anti-parallel
Strand 4	A	351	352	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	255	267	anti-parallel
Strand 3	A	236	248	anti-parallel
Strand 4	A	199	205	anti-parallel
Strand 5	B	196	202	anti-parallel
Strand 6	B	236	248	anti-parallel
Strand 7	B	257	268	anti-parallel
Strand 8	B	138	139	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	236	248	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	B	196	202	anti-parallel
Strand 5	B	236	248	anti-parallel
Strand 6	B	193	194	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	160	164	anti-parallel
Strand 3	A	171	177	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	318	319	anti-parallel
Strand 3	A	333	334	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	391	first strand
Strand 2	A	394	398	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	106	110	anti-parallel
Strand 3	B	339	344	anti-parallel
Strand 4	B	351	352	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	318	322	anti-parallel
Strand 3	B	329	334	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	398	399	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	391	first strand
Strand 2	B	394	395	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	339	346	anti-parallel
Strand 4	C	349	352	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	255	267	anti-parallel
Strand 3	C	237	248	anti-parallel
Strand 4	C	193	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	255	267	anti-parallel
Strand 3	C	237	248	anti-parallel
Strand 4	C	199	206	anti-parallel
Strand 5	C	210	216	anti-parallel
Strand 6	C	221	222	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	160	164	anti-parallel
Strand 3	C	171	177	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	316	320	anti-parallel
Strand 3	C	333	334	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	390	first strand
Strand 2	C	395	399	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	118	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	339	344	anti-parallel
Strand 4	D	351	352	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	160	164	anti-parallel
Strand 3	D	171	177	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	195	first strand
Strand 2	D	236	248	anti-parallel
Strand 3	D	199	205	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	195	first strand
Strand 2	D	236	248	anti-parallel
Strand 3	D	257	268	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	222	223	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	391	first strand
Strand 2	D	394	398	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SV7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SV7