Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SVB entry

There is 1 chain in PDB entry 5SVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 14	ARG 684

There are129 helices in PDB entry 5SVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	53	77	Right-handed alpha
Helix 5	AA5	A	110	125	Right-handed alpha
Helix 6	AA6	A	213	221	Right-handed alpha
Helix 7	AA7	A	226	256	Right-handed alpha
Helix 8	AA8	A	256	283	Right-handed alpha
Helix 9	AA9	A	307	311	Right-handed 310
Helix 10	AB1	A	348	356	Right-handed alpha
Helix 11	AB2	A	356	361	Right-handed alpha
Helix 12	AB3	A	372	377	Right-handed alpha
Helix 13	AB4	A	400	423	Right-handed alpha
Helix 14	AB5	A	424	428	Right-handed 310
Helix 15	AB6	A	456	460	Right-handed 310
Helix 16	AB7	A	487	495	Right-handed alpha
Helix 17	AB8	A	566	574	Right-handed alpha
Helix 18	AB9	A	589	594	Right-handed alpha
Helix 19	AC1	A	630	634	Right-handed 310
Helix 20	AC2	A	635	645	Right-handed alpha
Helix 21	AC3	A	651	656	Right-handed alpha
Helix 22	AC4	A	672	691	Right-handed alpha
Helix 23	AC5	A	694	707	Right-handed alpha
Helix 24	AC6	A	711	725	Right-handed alpha
Helix 25	AC7	A	725	737	Right-handed alpha
Helix 26	AC8	A	745	749	Right-handed 310
Helix 27	AC9	A	761	765	Right-handed 310
Helix 28	AD1	B	42	44	Right-handed 310
Helix 29	AD2	B	45	60	Right-handed alpha
Helix 30	AD3	B	64	70	Right-handed alpha
Helix 31	AD4	B	80	88	Right-handed alpha
Helix 32	AD5	B	111	115	Right-handed 310
Helix 33	AD6	B	119	125	Right-handed alpha
Helix 34	AD7	B	126	129	Right-handed 310
Helix 35	AD8	B	137	139	Right-handed 310
Helix 36	AD9	B	159	173	Right-handed alpha
Helix 37	AE1	B	189	207	Right-handed alpha
Helix 38	AE2	B	215	219	Right-handed alpha
Helix 39	AE3	B	223	237	Right-handed alpha
Helix 40	AE4	B	237	254	Right-handed alpha
Helix 41	AE5	B	278	282	Right-handed 310
Helix 42	AE6	B	286	301	Right-handed alpha
Helix 43	AE7	B	373	376	Right-handed 310
Helix 44	AE8	B	380	384	Right-handed 310
Helix 45	AE9	B	389	397	Right-handed alpha
Helix 46	AF1	B	401	409	Right-handed 310
Helix 47	AF2	B	413	425	Right-handed alpha
Helix 48	AF3	B	425	430	Right-handed alpha
Helix 49	AF4	B	432	459	Right-handed alpha
Helix 50	AF5	B	462	465	Right-handed 310
Helix 51	AF6	B	474	483	Right-handed alpha
Helix 52	AF7	B	496	498	Right-handed 310
Helix 53	AF8	B	499	508	Right-handed alpha
Helix 54	AF9	B	527	556	Right-handed alpha
Helix 55	AG1	B	559	563	Right-handed 310
Helix 56	AG2	B	591	610	Right-handed alpha
Helix 57	AG3	B	616	619	Right-handed 310
Helix 58	AG4	B	650	652	Right-handed 310
Helix 59	AG5	B	675	677	Right-handed 310
Helix 60	AG6	C	4	13	Right-handed alpha
Helix 61	AG7	C	17	27	Right-handed alpha
Helix 62	AG8	C	32	43	Right-handed alpha
Helix 63	AG9	C	86	90	Right-handed 310
Helix 64	AH1	C	98	103	Right-handed alpha
Helix 65	AH2	C	149	157	Right-handed alpha
Helix 66	AH3	D	23	39	Right-handed alpha
Helix 67	AH4	D	40	44	Right-handed 310
Helix 68	AH5	D	47	53	Right-handed alpha
Helix 69	AH6	D	53	77	Right-handed alpha
Helix 70	AH7	D	111	125	Right-handed alpha
Helix 71	AH8	D	213	221	Right-handed alpha
Helix 72	AH9	D	226	256	Right-handed alpha
Helix 73	AI1	D	256	283	Right-handed alpha
Helix 74	AI2	D	307	311	Right-handed 310
Helix 75	AI3	D	348	356	Right-handed alpha
Helix 76	AI4	D	356	361	Right-handed alpha
Helix 77	AI5	D	372	377	Right-handed alpha
Helix 78	AI6	D	400	423	Right-handed alpha
Helix 79	AI7	D	424	428	Right-handed 310
Helix 80	AI8	D	456	460	Right-handed 310
Helix 81	AI9	D	487	495	Right-handed alpha
Helix 82	AJ1	D	566	573	Right-handed alpha
Helix 83	AJ2	D	589	594	Right-handed alpha
Helix 84	AJ3	D	630	634	Right-handed 310
Helix 85	AJ4	D	635	645	Right-handed alpha
Helix 86	AJ5	D	651	656	Right-handed alpha
Helix 87	AJ6	D	672	691	Right-handed alpha
Helix 88	AJ7	D	694	707	Right-handed alpha
Helix 89	AJ8	D	711	725	Right-handed alpha
Helix 90	AJ9	D	725	737	Right-handed alpha
Helix 91	AK1	D	745	749	Right-handed 310
Helix 92	AK2	E	45	59	Right-handed alpha
Helix 93	AK3	E	60	62	Right-handed 310
Helix 94	AK4	E	64	72	Right-handed alpha
Helix 95	AK5	E	80	88	Right-handed alpha
Helix 96	AK6	E	111	115	Right-handed 310
Helix 97	AK7	E	119	125	Right-handed alpha
Helix 98	AK8	E	126	129	Right-handed 310
Helix 99	AK9	E	137	139	Right-handed 310
Helix 100	AL1	E	159	173	Right-handed alpha
Helix 101	AL2	E	189	207	Right-handed alpha
Helix 102	AL3	E	215	219	Right-handed alpha
Helix 103	AL4	E	223	237	Right-handed alpha
Helix 104	AL5	E	237	254	Right-handed alpha
Helix 105	AL6	E	278	283	Right-handed 310
Helix 106	AL7	E	287	301	Right-handed alpha
Helix 107	AL8	E	373	376	Right-handed 310
Helix 108	AL9	E	380	384	Right-handed 310
Helix 109	AM1	E	389	397	Right-handed alpha
Helix 110	AM2	E	401	409	Right-handed 310
Helix 111	AM3	E	413	425	Right-handed alpha
Helix 112	AM4	E	426	430	Right-handed 310
Helix 113	AM5	E	432	459	Right-handed alpha
Helix 114	AM6	E	462	465	Right-handed 310
Helix 115	AM7	E	474	484	Right-handed alpha
Helix 116	AM8	E	496	498	Right-handed 310
Helix 117	AM9	E	499	508	Right-handed alpha
Helix 118	AN1	E	527	555	Right-handed alpha
Helix 119	AN2	E	559	563	Right-handed 310
Helix 120	AN3	E	591	610	Right-handed alpha
Helix 121	AN4	E	616	619	Right-handed 310
Helix 122	AN5	E	650	652	Right-handed 310
Helix 123	AN6	E	675	677	Right-handed 310
Helix 124	AN7	F	4	13	Right-handed alpha
Helix 125	AN8	F	17	27	Right-handed alpha
Helix 126	AN9	F	32	43	Right-handed alpha
Helix 127	AO1	F	86	90	Right-handed 310
Helix 128	AO2	F	98	103	Right-handed alpha
Helix 129	AO3	F	149	157	Right-handed alpha

There are 34 sheets in PDB entry 5SVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	165	175	anti-parallel
Strand 4	A	153	162	anti-parallel
Strand 5	A	138	141	anti-parallel
Strand 6	A	204	208	anti-parallel
Strand 7	A	211	212	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	381	first strand
Strand 2	A	330	333	parallel
Strand 3	A	313	324	anti-parallel
Strand 4	A	286	297	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	530	535	anti-parallel
Strand 3	A	610	612	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	617	621	anti-parallel
Strand 4	A	559	563	anti-parallel
Strand 5	A	598	602	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	663	first strand
Strand 2	A	669	671	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	130	134	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	11	17	anti-parallel
Strand 4	B	74	77	parallel
Strand 5	B	262	264	parallel
Strand 6	B	270	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	94	99	parallel
Strand 3	B	177	180	parallel
Strand 4	B	212	214	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	154	156	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	315	321	anti-parallel
Strand 3	B	346	349	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	315	321	anti-parallel
Strand 3	B	305	310	anti-parallel
Strand 4	B	467	471	parallel
Strand 5	B	490	494	parallel
Strand 6	B	711	715	anti-parallel
Strand 7	B	703	706	anti-parallel
Strand 8	B	682	684	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	342	343	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	336	337	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	365	371	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	522	first strand
Strand 2	B	621	632	anti-parallel
Strand 3	B	564	573	anti-parallel
Strand 4	B	582	583	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	662	first strand
Strand 2	B	665	673	anti-parallel
Strand 3	B	687	690	parallel
Strand 4	B	695	698	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	56	first strand
Strand 2	C	59	63	anti-parallel
Strand 3	C	70	74	anti-parallel
Strand 4	C	79	82	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	165	175	anti-parallel
Strand 4	D	153	162	anti-parallel
Strand 5	D	138	141	anti-parallel
Strand 6	D	204	208	anti-parallel
Strand 7	D	211	212	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	381	first strand
Strand 2	D	330	333	parallel
Strand 3	D	313	324	anti-parallel
Strand 4	D	286	297	anti-parallel
Strand 5	F	146	148	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	530	535	anti-parallel
Strand 3	D	610	612	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	504	first strand
Strand 2	D	520	526	anti-parallel
Strand 3	D	617	621	anti-parallel
Strand 4	D	559	563	anti-parallel
Strand 5	D	598	602	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	661	663	first strand
Strand 2	D	669	671	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	692	693	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	119	123	anti-parallel
Strand 4	F	130	134	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	39	first strand
Strand 2	E	23	29	anti-parallel
Strand 3	E	11	17	anti-parallel
Strand 4	E	74	77	parallel
Strand 5	E	262	264	parallel
Strand 6	E	270	272	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	144	first strand
Strand 2	E	95	99	parallel
Strand 3	E	178	180	parallel
Strand 4	E	212	214	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	154	156	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	324	325	first strand
Strand 2	E	315	321	anti-parallel
Strand 3	E	346	349	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	324	325	first strand
Strand 2	E	315	321	anti-parallel
Strand 3	E	305	310	anti-parallel
Strand 4	E	467	471	parallel
Strand 5	E	490	494	parallel
Strand 6	E	711	715	anti-parallel
Strand 7	E	703	706	anti-parallel
Strand 8	E	682	684	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	E	342	343	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	333	first strand
Strand 2	E	336	337	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	365	371	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	522	first strand
Strand 2	E	621	632	anti-parallel
Strand 3	E	564	573	anti-parallel
Strand 4	E	582	583	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	662	first strand
Strand 2	E	665	673	anti-parallel
Strand 3	E	687	690	parallel
Strand 4	E	695	698	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	56	first strand
Strand 2	F	59	63	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	79	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVB