Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SVC entry

There are 2 chains in PDB entry 5SVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 14	GLU 776
B	LEU 8	LYS 533

There are134 helices in PDB entry 5SVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	53	76	Right-handed alpha
Helix 5	AA5	A	81	86	Right-handed alpha
Helix 6	AA6	A	110	125	Right-handed alpha
Helix 7	AA7	A	143	147	Right-handed 310
Helix 8	AA8	A	213	222	Right-handed alpha
Helix 9	AA9	A	226	256	Right-handed alpha
Helix 10	AB1	A	256	283	Right-handed alpha
Helix 11	AB2	A	307	311	Right-handed 310
Helix 12	AB3	A	348	363	Right-handed alpha
Helix 13	AB4	A	372	377	Right-handed alpha
Helix 14	AB5	A	400	423	Right-handed alpha
Helix 15	AB6	A	424	428	Right-handed 310
Helix 16	AB7	A	456	460	Right-handed 310
Helix 17	AB8	A	487	495	Right-handed alpha
Helix 18	AB9	A	566	574	Right-handed alpha
Helix 19	AC1	A	590	594	Right-handed 310
Helix 20	AC2	A	630	634	Right-handed 310
Helix 21	AC3	A	635	645	Right-handed alpha
Helix 22	AC4	A	649	658	Right-handed alpha
Helix 23	AC5	A	673	691	Right-handed alpha
Helix 24	AC6	A	694	707	Right-handed alpha
Helix 25	AC7	A	711	725	Right-handed alpha
Helix 26	AC8	A	725	737	Right-handed alpha
Helix 27	AC9	A	745	749	Right-handed 310
Helix 28	AD1	A	761	765	Right-handed 310
Helix 29	AD2	B	46	61	Right-handed alpha
Helix 30	AD3	B	64	70	Right-handed alpha
Helix 31	AD4	B	80	88	Right-handed alpha
Helix 32	AD5	B	104	109	Right-handed alpha
Helix 33	AD6	B	111	115	Right-handed 310
Helix 34	AD7	B	119	125	Right-handed alpha
Helix 35	AD8	B	126	129	Right-handed 310
Helix 36	AD9	B	137	139	Right-handed 310
Helix 37	AE1	B	159	173	Right-handed alpha
Helix 38	AE2	B	189	207	Right-handed alpha
Helix 39	AE3	B	215	219	Right-handed alpha
Helix 40	AE4	B	223	237	Right-handed alpha
Helix 41	AE5	B	237	255	Right-handed alpha
Helix 42	AE6	B	277	282	Right-handed 310
Helix 43	AE7	B	283	301	Right-handed alpha
Helix 44	AE8	B	380	384	Right-handed 310
Helix 45	AE9	B	389	397	Right-handed alpha
Helix 46	AF1	B	404	409	Right-handed 310
Helix 47	AF2	B	413	425	Right-handed alpha
Helix 48	AF3	B	432	460	Right-handed alpha
Helix 49	AF4	B	462	465	Right-handed 310
Helix 50	AF5	B	474	477	Right-handed 310
Helix 51	AF6	B	478	484	Right-handed alpha
Helix 52	AF7	B	496	498	Right-handed 310
Helix 53	AF8	B	499	507	Right-handed alpha
Helix 54	AF9	B	529	556	Right-handed alpha
Helix 55	AG1	B	559	563	Right-handed 310
Helix 56	AG2	B	592	610	Right-handed alpha
Helix 57	AG3	B	611	615	Right-handed 310
Helix 58	AG4	B	616	619	Right-handed 310
Helix 59	AG5	B	650	652	Right-handed 310
Helix 60	AG6	B	675	677	Right-handed 310
Helix 61	AG7	C	4	13	Right-handed alpha
Helix 62	AG8	C	17	27	Right-handed alpha
Helix 63	AG9	C	32	43	Right-handed alpha
Helix 64	AH1	C	86	90	Right-handed 310
Helix 65	AH2	C	98	103	Right-handed alpha
Helix 66	AH3	C	149	157	Right-handed alpha
Helix 67	AH4	D	23	39	Right-handed alpha
Helix 68	AH5	D	40	44	Right-handed 310
Helix 69	AH6	D	47	53	Right-handed alpha
Helix 70	AH7	D	53	76	Right-handed alpha
Helix 71	AH8	D	77	79	Right-handed 310
Helix 72	AH9	D	81	86	Right-handed alpha
Helix 73	AI1	D	110	125	Right-handed alpha
Helix 74	AI2	D	143	147	Right-handed 310
Helix 75	AI3	D	213	222	Right-handed alpha
Helix 76	AI4	D	226	256	Right-handed alpha
Helix 77	AI5	D	256	283	Right-handed alpha
Helix 78	AI6	D	307	311	Right-handed 310
Helix 79	AI7	D	348	364	Right-handed alpha
Helix 80	AI8	D	372	377	Right-handed alpha
Helix 81	AI9	D	400	423	Right-handed alpha
Helix 82	AJ1	D	424	428	Right-handed 310
Helix 83	AJ2	D	456	460	Right-handed 310
Helix 84	AJ3	D	487	495	Right-handed alpha
Helix 85	AJ4	D	566	574	Right-handed alpha
Helix 86	AJ5	D	589	594	Right-handed alpha
Helix 87	AJ6	D	630	634	Right-handed 310
Helix 88	AJ7	D	635	645	Right-handed alpha
Helix 89	AJ8	D	650	658	Right-handed alpha
Helix 90	AJ9	D	672	691	Right-handed alpha
Helix 91	AK1	D	694	708	Right-handed alpha
Helix 92	AK2	D	711	725	Right-handed alpha
Helix 93	AK3	D	725	737	Right-handed alpha
Helix 94	AK4	D	745	749	Right-handed 310
Helix 95	AK5	D	761	765	Right-handed 310
Helix 96	AK6	E	46	60	Right-handed alpha
Helix 97	AK7	E	64	70	Right-handed alpha
Helix 98	AK8	E	80	88	Right-handed alpha
Helix 99	AK9	E	104	109	Right-handed alpha
Helix 100	AL1	E	111	115	Right-handed 310
Helix 101	AL2	E	119	125	Right-handed alpha
Helix 102	AL3	E	126	129	Right-handed 310
Helix 103	AL4	E	137	139	Right-handed 310
Helix 104	AL5	E	159	173	Right-handed alpha
Helix 105	AL6	E	189	207	Right-handed alpha
Helix 106	AL7	E	215	219	Right-handed alpha
Helix 107	AL8	E	223	237	Right-handed alpha
Helix 108	AL9	E	241	255	Right-handed alpha
Helix 109	AM1	E	277	282	Right-handed 310
Helix 110	AM2	E	283	301	Right-handed alpha
Helix 111	AM3	E	380	384	Right-handed 310
Helix 112	AM4	E	389	398	Right-handed alpha
Helix 113	AM5	E	404	409	Right-handed 310
Helix 114	AM6	E	413	425	Right-handed alpha
Helix 115	AM7	E	425	430	Right-handed alpha
Helix 116	AM8	E	432	460	Right-handed alpha
Helix 117	AM9	E	462	466	Right-handed 310
Helix 118	AN1	E	474	477	Right-handed 310
Helix 119	AN2	E	478	484	Right-handed alpha
Helix 120	AN3	E	496	498	Right-handed 310
Helix 121	AN4	E	499	507	Right-handed alpha
Helix 122	AN5	E	529	556	Right-handed alpha
Helix 123	AN6	E	559	563	Right-handed 310
Helix 124	AN7	E	592	610	Right-handed alpha
Helix 125	AN8	E	611	615	Right-handed 310
Helix 126	AN9	E	616	619	Right-handed 310
Helix 127	AO1	E	650	652	Right-handed 310
Helix 128	AO2	E	675	677	Right-handed 310
Helix 129	AO3	F	4	13	Right-handed alpha
Helix 130	AO4	F	17	27	Right-handed alpha
Helix 131	AO5	F	32	43	Right-handed alpha
Helix 132	AO6	F	86	90	Right-handed 310
Helix 133	AO7	F	98	103	Right-handed alpha
Helix 134	AO8	F	149	157	Right-handed alpha

There are 29 sheets in PDB entry 5SVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	165	175	anti-parallel
Strand 4	A	153	162	anti-parallel
Strand 5	A	138	141	anti-parallel
Strand 6	A	204	208	anti-parallel
Strand 7	A	211	212	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	381	first strand
Strand 2	A	330	333	parallel
Strand 3	A	313	324	anti-parallel
Strand 4	A	286	297	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	454	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	530	535	anti-parallel
Strand 4	A	610	612	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	617	622	anti-parallel
Strand 4	A	559	563	anti-parallel
Strand 5	A	598	602	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	663	first strand
Strand 2	A	669	672	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	130	134	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	11	18	anti-parallel
Strand 4	B	74	79	parallel
Strand 5	B	262	264	parallel
Strand 6	B	270	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	94	99	parallel
Strand 3	B	177	181	parallel
Strand 4	B	212	214	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	315	320	anti-parallel
Strand 3	B	305	310	anti-parallel
Strand 4	B	467	470	parallel
Strand 5	B	490	494	parallel
Strand 6	B	711	715	anti-parallel
Strand 7	B	703	706	anti-parallel
Strand 8	B	682	684	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	342	343	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	365	371	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	522	first strand
Strand 2	B	621	632	anti-parallel
Strand 3	B	564	573	anti-parallel
Strand 4	B	580	583	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	661	first strand
Strand 2	B	666	673	anti-parallel
Strand 3	B	687	690	parallel
Strand 4	B	695	698	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	56	first strand
Strand 2	C	59	63	anti-parallel
Strand 3	C	70	74	anti-parallel
Strand 4	C	79	82	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	165	175	anti-parallel
Strand 4	D	153	162	anti-parallel
Strand 5	D	138	141	anti-parallel
Strand 6	D	204	208	anti-parallel
Strand 7	D	211	212	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	381	first strand
Strand 2	D	330	333	parallel
Strand 3	D	313	324	anti-parallel
Strand 4	D	286	297	anti-parallel
Strand 5	F	146	148	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	454	first strand
Strand 2	D	440	444	anti-parallel
Strand 3	D	530	535	anti-parallel
Strand 4	D	610	612	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	504	first strand
Strand 2	D	520	526	anti-parallel
Strand 3	D	617	622	anti-parallel
Strand 4	D	559	563	anti-parallel
Strand 5	D	598	602	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	661	663	first strand
Strand 2	D	669	671	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	692	693	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	119	123	anti-parallel
Strand 4	F	130	134	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	40	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	11	18	anti-parallel
Strand 4	E	74	79	parallel
Strand 5	E	262	264	parallel
Strand 6	E	270	272	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	144	first strand
Strand 2	E	94	99	parallel
Strand 3	E	177	181	parallel
Strand 4	E	212	214	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	154	156	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	348	first strand
Strand 2	E	315	320	anti-parallel
Strand 3	E	305	310	anti-parallel
Strand 4	E	467	470	parallel
Strand 5	E	491	494	parallel
Strand 6	E	711	715	anti-parallel
Strand 7	E	703	706	anti-parallel
Strand 8	E	682	684	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	328	first strand
Strand 2	E	342	343	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	365	371	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	522	first strand
Strand 2	E	621	632	anti-parallel
Strand 3	E	564	573	anti-parallel
Strand 4	E	580	583	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	661	first strand
Strand 2	E	666	673	anti-parallel
Strand 3	E	687	690	parallel
Strand 4	E	695	698	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	56	first strand
Strand 2	F	59	63	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	79	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVC