Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SVD entry

There are 2 chains in PDB entry 5SVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 50PRO 634
B
 GLN 50PRO 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5SVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 74Right-handed alpha
Helix 2
AA2
A
78 94Right-handed alpha
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
132 138Right-handed alpha
Helix 7
AA7
A
141 160Right-handed alpha
Helix 8
AA8
A
177 190Right-handed alpha
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
201 214Right-handed alpha
Helix 11
AB2
A
255 274Right-handed alpha
Helix 12
AB3
A
286 296Right-handed alpha
Helix 13
AB4
A
300 311Right-handed alpha
Helix 14
AB5
A
312 314Right-handed 310
Helix 15
AB6
A
318 325Right-handed alpha
Helix 16
AB7
A
332 343Right-handed alpha
Helix 17
AB8
A
345 357Right-handed alpha
Helix 18
AB9
A
360 372Right-handed alpha
Helix 19
AC1
A
375 381Right-handed alpha
Helix 20
AC2
A
385 397Right-handed alpha
Helix 21
AC3
A
398 410Right-handed alpha
Helix 22
AC4
A
412 420Right-handed alpha
Helix 23
AC5
A
420 434Right-handed alpha
Helix 24
AC6
A
438 451Right-handed alpha
Helix 25
AC7
A
459 466Right-handed alpha
Helix 26
AC8
A
467 470Right-handed 310
Helix 27
AC9
A
481 498Right-handed alpha
Helix 28
AD1
A
498 512Right-handed alpha
Helix 29
AD2
A
513 522Right-handed alpha
Helix 30
AD3
A
525 534Right-handed alpha
Helix 31
AD4
A
535 539Right-handed 310
Helix 32
AD5
A
540 552Right-handed alpha
Helix 33
AD6
A
554 560Right-handed alpha
Helix 34
AD7
A
563 575Right-handed alpha
Helix 35
AD8
A
578 592Right-handed alpha
Helix 36
AD9
A
592 598Right-handed alpha
Helix 37
AE1
A
599 609Right-handed alpha
Helix 38
AE2
A
610 617Right-handed alpha
Helix 39
AE3
A
617 633Right-handed alpha
Helix 40
AE4
B
57 74Right-handed alpha
Helix 41
AE5
B
78 94Right-handed alpha
Helix 42
AE6
B
96 103Right-handed alpha
Helix 43
AE7
B
103 117Right-handed alpha
Helix 44
AE8
B
118 128Right-handed alpha
Helix 45
AE9
B
132 138Right-handed alpha
Helix 46
AF1
B
141 159Right-handed alpha
Helix 47
AF2
B
177 190Right-handed alpha
Helix 48
AF3
B
192 199Right-handed alpha
Helix 49
AF4
B
201 214Right-handed alpha
Helix 50
AF5
B
257 274Right-handed alpha
Helix 51
AF6
B
279 283Right-handed 310
Helix 52
AF7
B
284 296Right-handed alpha
Helix 53
AF8
B
300 311Right-handed alpha
Helix 54
AF9
B
312 314Right-handed 310
Helix 55
AG1
B
318 325Right-handed alpha
Helix 56
AG2
B
332 343Right-handed alpha
Helix 57
AG3
B
345 357Right-handed alpha
Helix 58
AG4
B
360 372Right-handed alpha
Helix 59
AG5
B
375 381Right-handed alpha
Helix 60
AG6
B
385 397Right-handed alpha
Helix 61
AG7
B
398 410Right-handed alpha
Helix 62
AG8
B
412 420Right-handed alpha
Helix 63
AG9
B
420 434Right-handed alpha
Helix 64
AH1
B
438 451Right-handed alpha
Helix 65
AH2
B
459 465Right-handed alpha
Helix 66
AH3
B
466 470Right-handed 310
Helix 67
AH4
B
481 498Right-handed alpha
Helix 68
AH5
B
498 512Right-handed alpha
Helix 69
AH6
B
513 523Right-handed alpha
Helix 70
AH7
B
525 533Right-handed alpha
Helix 71
AH8
B
540 552Right-handed alpha
Helix 72
AH9
B
554 560Right-handed alpha
Helix 73
AI1
B
563 575Right-handed alpha
Helix 74
AI2
B
578 592Right-handed alpha
Helix 75
AI3
B
592 599Right-handed alpha
Helix 76
AI4
B
599 609Right-handed alpha
Helix 77
AI5
B
610 617Right-handed alpha
Helix 78
AI6
B
617 633Right-handed alpha
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There are no sheets in PDB entry 5SVD
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