Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SVP entry

There are 2 chains in PDB entry 5SVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	PHE 346
B	ILE 26	ASN 345

There are 21 helices in PDB entry 5SVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	40	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	165	170	Right-handed 310
Helix 6	AA6	A	196	203	Right-handed alpha
Helix 7	AA7	A	218	225	Right-handed alpha
Helix 8	AA8	A	228	236	Right-handed alpha
Helix 9	AA9	A	252	256	Right-handed 310
Helix 10	AB1	A	266	272	Right-handed alpha
Helix 11	AB2	A	317	346	Right-handed alpha
Helix 12	AB3	B	27	40	Right-handed alpha
Helix 13	AB4	B	76	80	Right-handed alpha
Helix 14	AB5	B	111	115	Right-handed 310
Helix 15	AB6	B	165	170	Right-handed 310
Helix 16	AB7	B	196	203	Right-handed alpha
Helix 17	AB8	B	218	225	Right-handed alpha
Helix 18	AB9	B	228	236	Right-handed alpha
Helix 19	AC1	B	252	256	Right-handed 310
Helix 20	AC2	B	266	272	Right-handed alpha
Helix 21	AC3	B	317	345	Right-handed alpha

There are 14 sheets in PDB entry 5SVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	139	first strand
Strand 2	A	145	153	anti-parallel
Strand 3	A	89	108	anti-parallel
Strand 4	A	81	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	153	first strand
Strand 2	A	89	108	anti-parallel
Strand 3	A	293	316	anti-parallel
Strand 4	A	50	53	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	89	108	anti-parallel
Strand 3	A	293	316	anti-parallel
Strand 4	A	279	287	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	287	first strand
Strand 2	A	293	316	anti-parallel
Strand 3	A	237	248	parallel
Strand 4	A	259	264	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	65	first strand
Strand 2	A	172	181	anti-parallel
Strand 3	A	186	189	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	65	first strand
Strand 2	A	172	181	anti-parallel
Strand 3	A	215	217	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	73	75	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	139	first strand
Strand 2	B	145	153	anti-parallel
Strand 3	B	89	108	anti-parallel
Strand 4	B	81	82	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	153	first strand
Strand 2	B	89	108	anti-parallel
Strand 3	B	293	316	anti-parallel
Strand 4	B	50	53	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	89	108	anti-parallel
Strand 3	B	293	316	anti-parallel
Strand 4	B	279	287	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	287	first strand
Strand 2	B	293	316	anti-parallel
Strand 3	B	237	248	parallel
Strand 4	B	259	264	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	65	first strand
Strand 2	B	172	181	anti-parallel
Strand 3	B	186	189	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	65	first strand
Strand 2	B	172	181	anti-parallel
Strand 3	B	215	217	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	73	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVP