Analysis of interatomic Contacts of Structural Units in PDB entry:
5SW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SW8 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5SW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -26	MET 789
A	GLU 791	THR 1053
B	LEU 328	TRP 597

There are 48 helices in PDB entry 5SW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	48	Right-handed alpha
Helix 2	AA2	A	88	93	Right-handed 310
Helix 3	AA3	A	108	113	Right-handed alpha
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed alpha
Helix 6	AA6	A	133	143	Right-handed alpha
Helix 7	AA7	A	143	155	Right-handed alpha
Helix 8	AA8	A	159	167	Right-handed alpha
Helix 9	AA9	A	178	183	Right-handed alpha
Helix 10	AB1	A	216	230	Right-handed alpha
Helix 11	AB2	A	235	248	Right-handed alpha
Helix 12	AB3	A	270	280	Right-handed alpha
Helix 13	AB4	A	290	295	Right-handed alpha
Helix 14	AB5	A	394	396	Right-handed 310
Helix 15	AB6	A	488	504	Right-handed alpha
Helix 16	AB7	A	527	536	Right-handed alpha
Helix 17	AB8	A	544	554	Right-handed alpha
Helix 18	AB9	A	554	559	Right-handed alpha
Helix 19	AC1	A	560	563	Right-handed 310
Helix 20	AC2	A	564	572	Right-handed alpha
Helix 21	AC3	A	576	589	Right-handed alpha
Helix 22	AC4	A	594	599	Right-handed alpha
Helix 23	AC5	A	600	603	Right-handed 310
Helix 24	AC6	A	608	623	Right-handed alpha
Helix 25	AC7	A	624	638	Right-handed alpha
Helix 26	AC8	A	639	642	Right-handed 310
Helix 27	AC9	A	647	660	Right-handed alpha
Helix 28	AD1	A	660	673	Right-handed alpha
Helix 29	AD2	A	680	695	Right-handed alpha
Helix 30	AD3	A	697	721	Right-handed alpha
Helix 31	AD4	A	728	741	Right-handed alpha
Helix 32	AD5	A	741	748	Right-handed alpha
Helix 33	AD6	A	766	769	Right-handed 310
Helix 34	AD7	A	789	793	Right-handed 310
Helix 35	AD8	A	807	826	Right-handed alpha
Helix 36	AD9	A	857	864	Right-handed alpha
Helix 37	AE1	A	875	885	Right-handed alpha
Helix 38	AE2	A	887	912	Right-handed alpha
Helix 39	AE3	A	957	965	Right-handed alpha
Helix 40	AE4	A	970	973	Right-handed 310
Helix 41	AE5	A	974	994	Right-handed alpha
Helix 42	AE6	A	994	1005	Right-handed alpha
Helix 43	AE7	A	1015	1027	Right-handed alpha
Helix 44	AE8	A	1031	1048	Right-handed alpha
Helix 45	AE9	B	342	347	Right-handed alpha
Helix 46	AF1	B	403	411	Right-handed alpha
Helix 47	AF2	B	451	507	Right-handed alpha
Helix 48	AF3	B	518	576	Right-handed alpha

There are 12 sheets in PDB entry 5SW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	35	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	98	102	parallel
Strand 3	A	69	73	anti-parallel
Strand 4	A	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	210	211	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	250	254	anti-parallel
Strand 3	A	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	484	485	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	473	477	anti-parallel
Strand 4	A	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	407	408	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	401	404	anti-parallel
Strand 3	A	425	428	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	760	764	anti-parallel
Strand 3	A	779	784	anti-parallel
Strand 4	A	770	771	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	760	764	anti-parallel
Strand 3	A	779	784	anti-parallel
Strand 4	A	796	803	anti-parallel
Strand 5	A	845	849	anti-parallel
Strand 6	A	838	840	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	380	381	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SW8