Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SWA entry

There are 2 chains in PDB entry 5SWA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 40	ASN 489
B	LYS 40	ASN 489

There are 42 helices in PDB entry 5SWA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	71	Right-handed alpha
Helix 2	AA2	A	83	94	Right-handed alpha
Helix 3	AA3	A	105	112	Right-handed alpha
Helix 4	AA4	A	126	132	Right-handed alpha
Helix 5	AA5	A	134	142	Right-handed alpha
Helix 6	AA6	A	166	173	Right-handed alpha
Helix 7	AA7	A	185	196	Right-handed alpha
Helix 8	AA8	A	239	241	Right-handed 310
Helix 9	AA9	A	243	258	Right-handed alpha
Helix 10	AB1	A	286	290	Right-handed 310
Helix 11	AB2	A	292	300	Right-handed alpha
Helix 12	AB3	A	314	319	Right-handed alpha
Helix 13	AB4	A	331	345	Right-handed alpha
Helix 14	AB5	A	345	354	Right-handed alpha
Helix 15	AB6	A	384	388	Right-handed 310
Helix 16	AB7	A	401	415	Right-handed alpha
Helix 17	AB8	A	430	441	Right-handed alpha
Helix 18	AB9	A	444	450	Right-handed alpha
Helix 19	AC1	A	454	468	Right-handed alpha
Helix 20	AC2	A	470	489	Right-handed alpha
Helix 21	AC3	B	54	71	Right-handed alpha
Helix 22	AC4	B	83	94	Right-handed alpha
Helix 23	AC5	B	105	110	Right-handed alpha
Helix 24	AC6	B	126	131	Right-handed alpha
Helix 25	AC7	B	134	141	Right-handed alpha
Helix 26	AC8	B	166	173	Right-handed alpha
Helix 27	AC9	B	182	184	Right-handed 310
Helix 28	AD1	B	185	196	Right-handed alpha
Helix 29	AD2	B	241	257	Right-handed alpha
Helix 30	AD3	B	286	290	Right-handed 310
Helix 31	AD4	B	292	300	Right-handed alpha
Helix 32	AD5	B	315	319	Right-handed 310
Helix 33	AD6	B	331	345	Right-handed alpha
Helix 34	AD7	B	345	354	Right-handed alpha
Helix 35	AD8	B	384	388	Right-handed 310
Helix 36	AD9	B	390	394	Right-handed 310
Helix 37	AE1	B	401	414	Right-handed alpha
Helix 38	AE2	B	426	429	Right-handed 310
Helix 39	AE3	B	430	442	Right-handed alpha
Helix 40	AE4	B	444	450	Right-handed alpha
Helix 41	AE5	B	454	467	Right-handed alpha
Helix 42	AE6	B	470	489	Right-handed alpha

There are 10 sheets in PDB entry 5SWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	42	47	parallel
Strand 3	A	100	102	parallel
Strand 4	A	322	325	anti-parallel
Strand 5	A	150	151	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	278	285	parallel
Strand 3	A	157	165	anti-parallel
Strand 4	A	303	307	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	278	285	parallel
Strand 3	A	157	165	anti-parallel
Strand 4	A	312	313	anti-parallel
Strand 5	A	416	417	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	236	237	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	363	first strand
Strand 2	A	370	373	anti-parallel
Strand 3	A	396	397	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	42	47	parallel
Strand 3	B	100	102	parallel
Strand 4	B	322	325	anti-parallel
Strand 5	B	150	151	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	146	147	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	202	first strand
Strand 2	B	278	285	parallel
Strand 3	B	159	165	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	224	227	anti-parallel
Strand 3	B	235	237	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	363	first strand
Strand 2	B	371	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SWA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWA