Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWF entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5SWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 36ASN 377
B
 LYS 668LEU 669
B
 PRO 671ASP 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5SWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 49Right-handed alpha
Helix 2
AA2
A
58 83Right-handed alpha
Helix 3
AA3
A
90 104Right-handed alpha
Helix 4
AA4
A
130 147Right-handed alpha
Helix 5
AA5
A
151 156Right-handed alpha
Helix 6
AA6
A
160 170Right-handed alpha
Helix 7
AA7
A
171 173Right-handed 310
Helix 8
AA8
A
175 193Right-handed alpha
Helix 9
AA9
A
193 213Right-handed alpha
Helix 10
AB1
A
220 233Right-handed alpha
Helix 11
AB2
A
240 250Right-handed alpha
Helix 12
AB3
A
252 256Right-handed 310
Helix 13
AB4
A
257 258Right-handed 310
Helix 14
AB5
A
259 278Right-handed alpha
Helix 15
AB6
A
281 292Right-handed alpha
Helix 16
AB7
A
300 313Right-handed alpha
Helix 17
AB8
A
316 336Right-handed alpha
Helix 18
AB9
A
339 348Right-handed alpha
Helix 19
AC1
A
349 351Right-handed 310
Helix 20
AC2
A
352 361Right-handed alpha
Helix 21
AC3
A
362 371Right-handed alpha
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There are no sheets in PDB entry 5SWF
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