Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SWI entry

There are 4 chains in PDB entry 5SWI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 2	HIS 694
A	LYS 2	SER 693
C	LYS 2	SER 693
D	LYS 2	HIS 694

There are108 helices in PDB entry 5SWI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	8	Right-handed alpha
Helix 2	AA2	B	91	95	Right-handed 310
Helix 3	AA3	B	218	225	Right-handed alpha
Helix 4	AA4	B	230	247	Right-handed alpha
Helix 5	AA5	B	259	270	Right-handed alpha
Helix 6	AA6	B	306	310	Right-handed alpha
Helix 7	AA7	B	312	321	Right-handed alpha
Helix 8	AA8	B	321	340	Right-handed alpha
Helix 9	AA9	B	358	369	Right-handed alpha
Helix 10	AB1	B	372	374	Right-handed 310
Helix 11	AB2	B	375	389	Right-handed alpha
Helix 12	AB3	B	400	408	Right-handed alpha
Helix 13	AB4	B	416	438	Right-handed alpha
Helix 14	AB5	B	440	451	Right-handed alpha
Helix 15	AB6	B	452	456	Right-handed 310
Helix 16	AB7	B	492	496	Right-handed alpha
Helix 17	AB8	B	497	498	Right-handed 310
Helix 18	AB9	B	499	501	Right-handed 310
Helix 19	AC1	B	502	511	Right-handed alpha
Helix 20	AC2	B	512	526	Right-handed alpha
Helix 21	AC3	B	539	547	Right-handed alpha
Helix 22	AC4	B	557	561	Right-handed 310
Helix 23	AC5	B	562	570	Right-handed 310
Helix 24	AC6	B	574	588	Right-handed alpha
Helix 25	AC7	B	602	614	Right-handed alpha
Helix 26	AC8	B	640	643	Right-handed 310
Helix 27	AC9	B	675	681	Right-handed alpha
Helix 28	AD1	A	3	8	Right-handed alpha
Helix 29	AD2	A	91	95	Right-handed 310
Helix 30	AD3	A	218	225	Right-handed alpha
Helix 31	AD4	A	230	247	Right-handed alpha
Helix 32	AD5	A	259	270	Right-handed alpha
Helix 33	AD6	A	306	310	Right-handed alpha
Helix 34	AD7	A	312	321	Right-handed alpha
Helix 35	AD8	A	321	340	Right-handed alpha
Helix 36	AD9	A	358	369	Right-handed alpha
Helix 37	AE1	A	372	374	Right-handed 310
Helix 38	AE2	A	375	389	Right-handed alpha
Helix 39	AE3	A	400	408	Right-handed alpha
Helix 40	AE4	A	416	438	Right-handed alpha
Helix 41	AE5	A	440	451	Right-handed alpha
Helix 42	AE6	A	452	456	Right-handed 310
Helix 43	AE7	A	491	496	Right-handed alpha
Helix 44	AE8	A	497	498	Right-handed 310
Helix 45	AE9	A	499	501	Right-handed 310
Helix 46	AF1	A	502	511	Right-handed alpha
Helix 47	AF2	A	512	526	Right-handed alpha
Helix 48	AF3	A	539	547	Right-handed alpha
Helix 49	AF4	A	557	561	Right-handed 310
Helix 50	AF5	A	562	570	Right-handed 310
Helix 51	AF6	A	574	588	Right-handed alpha
Helix 52	AF7	A	602	614	Right-handed alpha
Helix 53	AF8	A	640	643	Right-handed 310
Helix 54	AF9	A	675	681	Right-handed alpha
Helix 55	AG1	C	3	8	Right-handed alpha
Helix 56	AG2	C	91	95	Right-handed 310
Helix 57	AG3	C	218	225	Right-handed alpha
Helix 58	AG4	C	230	247	Right-handed alpha
Helix 59	AG5	C	259	270	Right-handed alpha
Helix 60	AG6	C	306	310	Right-handed alpha
Helix 61	AG7	C	312	321	Right-handed alpha
Helix 62	AG8	C	321	340	Right-handed alpha
Helix 63	AG9	C	358	369	Right-handed alpha
Helix 64	AH1	C	372	374	Right-handed 310
Helix 65	AH2	C	375	389	Right-handed alpha
Helix 66	AH3	C	403	408	Right-handed alpha
Helix 67	AH4	C	416	438	Right-handed alpha
Helix 68	AH5	C	440	451	Right-handed alpha
Helix 69	AH6	C	452	456	Right-handed 310
Helix 70	AH7	C	491	496	Right-handed alpha
Helix 71	AH8	C	497	498	Right-handed 310
Helix 72	AH9	C	499	501	Right-handed 310
Helix 73	AI1	C	502	511	Right-handed alpha
Helix 74	AI2	C	512	526	Right-handed alpha
Helix 75	AI3	C	539	547	Right-handed alpha
Helix 76	AI4	C	557	561	Right-handed 310
Helix 77	AI5	C	562	570	Right-handed 310
Helix 78	AI6	C	574	588	Right-handed alpha
Helix 79	AI7	C	602	614	Right-handed alpha
Helix 80	AI8	C	640	643	Right-handed 310
Helix 81	AI9	C	675	681	Right-handed alpha
Helix 82	AJ1	D	3	8	Right-handed alpha
Helix 83	AJ2	D	91	95	Right-handed 310
Helix 84	AJ3	D	218	225	Right-handed alpha
Helix 85	AJ4	D	230	247	Right-handed alpha
Helix 86	AJ5	D	259	270	Right-handed alpha
Helix 87	AJ6	D	306	310	Right-handed alpha
Helix 88	AJ7	D	312	321	Right-handed alpha
Helix 89	AJ8	D	321	340	Right-handed alpha
Helix 90	AJ9	D	358	369	Right-handed alpha
Helix 91	AK1	D	372	374	Right-handed 310
Helix 92	AK2	D	375	387	Right-handed alpha
Helix 93	AK3	D	401	408	Right-handed alpha
Helix 94	AK4	D	416	438	Right-handed alpha
Helix 95	AK5	D	440	451	Right-handed alpha
Helix 96	AK6	D	452	456	Right-handed 310
Helix 97	AK7	D	492	496	Right-handed alpha
Helix 98	AK8	D	497	498	Right-handed 310
Helix 99	AK9	D	499	501	Right-handed 310
Helix 100	AL1	D	502	511	Right-handed alpha
Helix 101	AL2	D	512	526	Right-handed alpha
Helix 102	AL3	D	539	547	Right-handed alpha
Helix 103	AL4	D	557	561	Right-handed 310
Helix 104	AL5	D	562	570	Right-handed 310
Helix 105	AL6	D	574	588	Right-handed alpha
Helix 106	AL7	D	602	614	Right-handed alpha
Helix 107	AL8	D	640	643	Right-handed 310
Helix 108	AL9	D	675	681	Right-handed alpha

There are 40 sheets in PDB entry 5SWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	77	83	anti-parallel
Strand 4	B	142	147	anti-parallel
Strand 5	B	198	203	anti-parallel
Strand 6	B	189	195	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	96	97	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	109	114	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	129	136	anti-parallel
Strand 5	B	207	215	anti-parallel
Strand 6	B	176	185	anti-parallel
Strand 7	B	161	169	anti-parallel
Strand 8	B	151	158	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	634	639	anti-parallel
Strand 3	B	644	651	anti-parallel
Strand 4	B	683	689	parallel
Strand 5	B	659	665	anti-parallel
Strand 6	B	668	669	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	285	288	anti-parallel
Strand 3	B	295	297	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	464	465	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	491	first strand
Strand 2	B	482	484	anti-parallel
Strand 3	B	531	534	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	616	first strand
Strand 2	B	624	627	anti-parallel
Strand 3	B	672	674	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	142	147	anti-parallel
Strand 5	A	198	203	anti-parallel
Strand 6	A	189	195	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	96	97	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	109	114	anti-parallel
Strand 3	A	119	125	anti-parallel
Strand 4	A	129	136	anti-parallel
Strand 5	A	207	215	anti-parallel
Strand 6	A	176	185	anti-parallel
Strand 7	A	161	169	anti-parallel
Strand 8	A	151	158	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	253	first strand
Strand 2	A	634	639	anti-parallel
Strand 3	A	644	651	anti-parallel
Strand 4	A	683	689	parallel
Strand 5	A	659	665	anti-parallel
Strand 6	A	668	669	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	301	302	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	285	288	anti-parallel
Strand 3	A	295	297	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	464	465	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	A	531	534	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	616	first strand
Strand 2	A	624	627	anti-parallel
Strand 3	A	672	674	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	198	203	anti-parallel
Strand 6	C	189	195	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	96	97	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	109	114	anti-parallel
Strand 3	C	119	125	anti-parallel
Strand 4	C	129	136	anti-parallel
Strand 5	C	207	215	anti-parallel
Strand 6	C	176	185	anti-parallel
Strand 7	C	161	169	anti-parallel
Strand 8	C	151	158	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	253	first strand
Strand 2	C	634	639	anti-parallel
Strand 3	C	644	651	anti-parallel
Strand 4	C	683	689	parallel
Strand 5	C	659	665	anti-parallel
Strand 6	C	668	669	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	301	302	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	285	288	anti-parallel
Strand 3	C	295	297	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	345	346	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	459	first strand
Strand 2	C	464	465	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	484	first strand
Strand 2	C	531	534	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	616	first strand
Strand 2	C	624	627	anti-parallel
Strand 3	C	672	674	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	61	64	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	142	147	anti-parallel
Strand 5	D	198	203	anti-parallel
Strand 6	D	189	195	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	96	97	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	109	114	anti-parallel
Strand 3	D	119	125	anti-parallel
Strand 4	D	129	136	anti-parallel
Strand 5	D	207	215	anti-parallel
Strand 6	D	176	185	anti-parallel
Strand 7	D	161	169	anti-parallel
Strand 8	D	151	158	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	634	639	anti-parallel
Strand 3	D	644	651	anti-parallel
Strand 4	D	683	689	parallel
Strand 5	D	659	665	anti-parallel
Strand 6	D	668	669	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	301	302	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	285	288	anti-parallel
Strand 3	D	295	297	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	459	first strand
Strand 2	D	464	465	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	491	first strand
Strand 2	D	482	484	anti-parallel
Strand 3	D	531	534	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	616	first strand
Strand 2	D	624	627	anti-parallel
Strand 3	D	672	674	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SWI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWI