Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWM entry

There are 4 chains in PDB entry 5SWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 63TYR 193
B
 GLU 62GLY 194
D
 DG 1 DA 3
D
 DC 5 DC 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5SWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 123Right-handed alpha
Helix 2
AA2
A
133 143Right-handed alpha
Helix 3
AA3
A
155 170Right-handed alpha
Helix 4
AA4
A
182 187Right-handed alpha
Helix 5
AA5
B
104 123Right-handed alpha
Helix 6
AA6
B
133 143Right-handed alpha
Helix 7
AA7
B
155 170Right-handed alpha
Helix 8
AA8
B
182 187Right-handed alpha
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There are 4 sheets in PDB entry 5SWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
79 87anti-parallel
Strand 3
A
100 103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
79 87anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
129 131parallel
Strand 5
A
178 180parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
79 87anti-parallel
Strand 3
B
100 103anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
79 87anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
129 131parallel
Strand 5
B
178 180parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il