Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5SWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26SER 6
A
 GLY 8MET 789
A
 GLU 791THR 1052
B
 SER 327LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5SWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
114 122Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 155Right-handed alpha
Helix 8
AA8
A
159 167Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
216 230Right-handed alpha
Helix 11
AB2
A
235 248Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
270 280Right-handed alpha
Helix 14
AB5
A
290 297Right-handed alpha
Helix 15
AB6
A
328 330Right-handed 310
Helix 16
AB7
A
394 396Right-handed 310
Helix 17
AB8
A
488 505Right-handed alpha
Helix 18
AB9
A
512 516Right-handed 310
Helix 19
AC1
A
524 536Right-handed alpha
Helix 20
AC2
A
544 554Right-handed alpha
Helix 21
AC3
A
556 563Right-handed 310
Helix 22
AC4
A
564 570Right-handed alpha
Helix 23
AC5
A
576 588Right-handed alpha
Helix 24
AC6
A
594 599Right-handed alpha
Helix 25
AC7
A
600 603Right-handed 310
Helix 26
AC8
A
608 622Right-handed alpha
Helix 27
AC9
A
624 631Right-handed alpha
Helix 28
AD1
A
631 639Right-handed alpha
Helix 29
AD2
A
640 642Right-handed 310
Helix 30
AD3
A
647 660Right-handed alpha
Helix 31
AD4
A
660 674Right-handed alpha
Helix 32
AD5
A
675 677Right-handed 310
Helix 33
AD6
A
680 695Right-handed alpha
Helix 34
AD7
A
697 720Right-handed alpha
Helix 35
AD8
A
727 740Right-handed alpha
Helix 36
AD9
A
741 748Right-handed alpha
Helix 37
AE1
A
789 794Right-handed alpha
Helix 38
AE2
A
807 827Right-handed alpha
Helix 39
AE3
A
857 864Right-handed alpha
Helix 40
AE4
A
874 885Right-handed alpha
Helix 41
AE5
A
887 912Right-handed alpha
Helix 42
AE6
A
939 943Right-handed 310
Helix 43
AE7
A
957 965Right-handed alpha
Helix 44
AE8
A
970 973Right-handed 310
Helix 45
AE9
A
974 993Right-handed alpha
Helix 46
AF1
A
994 1006Right-handed alpha
Helix 47
AF2
A
1015 1027Right-handed alpha
Helix 48
AF3
A
1031 1048Right-handed alpha
Helix 49
AF4
B
341 348Right-handed alpha
Helix 50
AF5
B
400 411Right-handed alpha
Helix 51
AF6
B
441 506Right-handed alpha
Helix 52
AF7
B
519 586Right-handed alpha
Helix 53
AF8
B
593 597Right-handed 310
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There are 11 sheets in PDB entry 5SWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
210 212anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
257 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
473 477anti-parallel
Strand 4
A
439 441anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
401 409anti-parallel
Strand 3
A
420 421anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
401 409anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
446 447anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 801anti-parallel
Strand 4
A
846 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
377 382anti-parallel
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