Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWU entry

There are 2 chains in PDB entry 5SWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1041GLY 1291
B
 ASP 1041GLY 1291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5SWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1041 1048Right-handed alpha
Helix 2
AA2
A
1065 1073Right-handed alpha
Helix 3
AA3
A
1084 1086Right-handed 310
Helix 4
AA4
A
1097 1112Right-handed alpha
Helix 5
AA5
A
1122 1126Right-handed 310
Helix 6
AA6
A
1133 1147Right-handed alpha
Helix 7
AA7
A
1159 1169Right-handed alpha
Helix 8
AA8
A
1193 1204Right-handed alpha
Helix 9
AA9
A
1216 1233Right-handed alpha
Helix 10
AB1
A
1246 1254Right-handed alpha
Helix 11
AB2
A
1274 1285Right-handed alpha
Helix 12
AB3
B
1042 1049Right-handed alpha
Helix 13
AB4
B
1065 1073Right-handed alpha
Helix 14
AB5
B
1084 1086Right-handed 310
Helix 15
AB6
B
1097 1112Right-handed alpha
Helix 16
AB7
B
1122 1126Right-handed 310
Helix 17
AB8
B
1133 1147Right-handed alpha
Helix 18
AB9
B
1159 1169Right-handed alpha
Helix 19
AC1
B
1193 1204Right-handed alpha
Helix 20
AC2
B
1216 1233Right-handed alpha
Helix 21
AC3
B
1246 1254Right-handed alpha
Helix 22
AC4
B
1274 1285Right-handed alpha
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There are 2 sheets in PDB entry 5SWU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1237 1242first strand
Strand 2
A
1206 1212parallel
Strand 3
A
1174 1180parallel
Strand 4
A
1151 1155parallel
Strand 5
A
1116 1119parallel
Strand 6
A
1078 1082parallel
Strand 7
A
1053 1057parallel
Strand 8
A
1257 1259parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1237 1242first strand
Strand 2
B
1206 1212parallel
Strand 3
B
1174 1180parallel
Strand 4
B
1151 1155parallel
Strand 5
B
1116 1119parallel
Strand 6
B
1078 1082parallel
Strand 7
B
1053 1057parallel
Strand 8
B
1257 1259parallel
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