Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWV entry

There is 1 chain in PDB entry 5SWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 1044GLU 1573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5SWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1044 1051Right-handed alpha
Helix 2
AA2
C
1063 1068Right-handed alpha
Helix 3
AA3
C
1070 1075Right-handed alpha
Helix 4
AA4
C
1086 1088Right-handed 310
Helix 5
AA5
C
1099 1112Right-handed alpha
Helix 6
AA6
C
1124 1128Right-handed 310
Helix 7
AA7
C
1135 1149Right-handed alpha
Helix 8
AA8
C
1161 1171Right-handed alpha
Helix 9
AA9
C
1193 1205Right-handed alpha
Helix 10
AB1
C
1218 1236Right-handed alpha
Helix 11
AB2
C
1246 1248Right-handed 310
Helix 12
AB3
C
1249 1256Right-handed alpha
Helix 13
AB4
C
1277 1288Right-handed alpha
Helix 14
AB5
C
1307 1320Right-handed alpha
Helix 15
AB6
C
1333 1335Right-handed 310
Helix 16
AB7
C
1336 1341Right-handed alpha
Helix 17
AB8
C
1358 1362Right-handed 310
Helix 18
AB9
C
1366 1373Right-handed alpha
Helix 19
AC1
C
1394 1407Right-handed alpha
Helix 20
AC2
C
1423 1436Right-handed alpha
Helix 21
AC3
C
1447 1456Right-handed alpha
Helix 22
AC4
C
1473 1479Right-handed alpha
Helix 23
AC5
C
1496 1509Right-handed alpha
Helix 24
AC6
C
1526 1535Right-handed alpha
Helix 25
AC7
C
1541 1559Right-handed alpha
Helix 26
AC8
C
1563 1573Right-handed alpha
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There are 3 sheets in PDB entry 5SWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1240 1245first strand
Strand 2
C
1209 1215parallel
Strand 3
C
1176 1182parallel
Strand 4
C
1153 1157parallel
Strand 5
C
1118 1121parallel
Strand 6
C
1080 1084parallel
Strand 7
C
1055 1059parallel
Strand 8
C
1260 1262parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1324 1327first strand
Strand 2
C
1295 1299parallel
Strand 3
C
1345 1350parallel
Strand 4
C
1377 1382anti-parallel
Strand 5
C
1387 1392anti-parallel
Strand 6
C
1364 1365parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1464 1468first strand
Strand 2
C
1440 1445parallel
Strand 3
C
1416 1420parallel
Strand 4
C
1482 1487parallel
Strand 5
C
1510 1518parallel
Strand 6
C
1538 1540parallel
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