Analysis of interatomic Contacts of Structural Units in PDB entry:
5SWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SWW entry

There are 8 chains in PDB entry 5SWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10GLN 195
B
 ARG 10GLN 195
C
 GLY 8ASN 196
D
 SER 7ASN 196
E
 A -2 G 3
F
 A -2 G 3
G
 A -2 G 3
H
 A -2 G 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5SWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
70 77Right-handed alpha
Helix 3
AA3
A
78 83Right-handed 310
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
135 146Right-handed alpha
Helix 6
AA6
A
154 166Right-handed alpha
Helix 7
AA7
A
178 194Right-handed alpha
Helix 8
AA8
B
14 22Right-handed alpha
Helix 9
AA9
B
70 77Right-handed alpha
Helix 10
AB1
B
78 83Right-handed 310
Helix 11
AB2
B
105 117Right-handed alpha
Helix 12
AB3
B
135 146Right-handed alpha
Helix 13
AB4
B
154 166Right-handed alpha
Helix 14
AB5
B
178 194Right-handed alpha
Helix 15
AB6
C
14 22Right-handed alpha
Helix 16
AB7
C
70 79Right-handed alpha
Helix 17
AB8
C
80 83Right-handed 310
Helix 18
AB9
C
105 117Right-handed alpha
Helix 19
AC1
C
135 146Right-handed alpha
Helix 20
AC2
C
154 166Right-handed alpha
Helix 21
AC3
C
178 194Right-handed alpha
Helix 22
AC4
D
14 22Right-handed alpha
Helix 23
AC5
D
70 83Right-handed alpha
Helix 24
AC6
D
105 117Right-handed alpha
Helix 25
AC7
D
135 146Right-handed alpha
Helix 26
AC8
D
154 166Right-handed alpha
Helix 27
AC9
D
178 194Right-handed alpha
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There are 4 sheets in PDB entry 5SWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 56first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
120 128parallel
Strand 5
A
149 152parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
32 40anti-parallel
Strand 3
B
89 98anti-parallel
Strand 4
B
120 128parallel
Strand 5
B
149 152parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 56first strand
Strand 2
C
32 40anti-parallel
Strand 3
C
89 98anti-parallel
Strand 4
C
120 128parallel
Strand 5
C
149 152parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 56first strand
Strand 2
D
32 39anti-parallel
Strand 3
D
90 98anti-parallel
Strand 4
D
120 128parallel
Strand 5
D
149 152parallel
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