Analysis of interatomic Contacts of Structural Units in PDB entry:
5SX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SX9 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5SX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26MET 789
A
 GLU 791THR 1053
B
 SER 327TRP 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5SX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
109 113Right-handed 310
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
143 155Right-handed alpha
Helix 10
AB1
A
159 167Right-handed alpha
Helix 11
AB2
A
178 183Right-handed alpha
Helix 12
AB3
A
184 186Right-handed 310
Helix 13
AB4
A
216 229Right-handed alpha
Helix 14
AB5
A
235 248Right-handed alpha
Helix 15
AB6
A
266 269Right-handed 310
Helix 16
AB7
A
270 279Right-handed alpha
Helix 17
AB8
A
290 295Right-handed alpha
Helix 18
AB9
A
328 330Right-handed 310
Helix 19
AC1
A
394 396Right-handed 310
Helix 20
AC2
A
488 504Right-handed alpha
Helix 21
AC3
A
508 514Right-handed 310
Helix 22
AC4
A
524 536Right-handed alpha
Helix 23
AC5
A
544 555Right-handed alpha
Helix 24
AC6
A
556 560Right-handed 310
Helix 25
AC7
A
561 563Right-handed 310
Helix 26
AC8
A
564 572Right-handed alpha
Helix 27
AC9
A
576 588Right-handed alpha
Helix 28
AD1
A
594 599Right-handed alpha
Helix 29
AD2
A
600 603Right-handed 310
Helix 30
AD3
A
608 623Right-handed alpha
Helix 31
AD4
A
624 631Right-handed alpha
Helix 32
AD5
A
631 639Right-handed alpha
Helix 33
AD6
A
647 660Right-handed alpha
Helix 34
AD7
A
660 673Right-handed alpha
Helix 35
AD8
A
680 695Right-handed alpha
Helix 36
AD9
A
697 720Right-handed alpha
Helix 37
AE1
A
727 741Right-handed alpha
Helix 38
AE2
A
741 748Right-handed alpha
Helix 39
AE3
A
789 794Right-handed alpha
Helix 40
AE4
A
807 827Right-handed alpha
Helix 41
AE5
A
857 864Right-handed alpha
Helix 42
AE6
A
875 885Right-handed alpha
Helix 43
AE7
A
887 912Right-handed alpha
Helix 44
AE8
A
917 919Right-handed 310
Helix 45
AE9
A
957 965Right-handed alpha
Helix 46
AF1
A
970 973Right-handed 310
Helix 47
AF2
A
974 993Right-handed alpha
Helix 48
AF3
A
994 1005Right-handed alpha
Helix 49
AF4
A
1006 1008Right-handed 310
Helix 50
AF5
A
1016 1025Right-handed alpha
Helix 51
AF6
A
1031 1048Right-handed alpha
Helix 52
AF7
B
341 348Right-handed alpha
Helix 53
AF8
B
402 411Right-handed alpha
Helix 54
AF9
B
435 439Right-handed 310
Helix 55
AG1
B
442 511Right-handed alpha
Helix 56
AG2
B
517 588Right-handed alpha
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There are 9 sheets in PDB entry 5SX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
210 212anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
285 289parallel
Strand 3
A
250 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
401 409anti-parallel
Strand 3
A
420 421anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 361first strand
Strand 2
A
401 409anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
446 447anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 801anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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