Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SXB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5SXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26SER 6
A
 GLY 8MET 789
A
 GLU 791ASP 1056
B
 GLN 329TRP 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5SXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
109 113Right-handed 310
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
133 155Right-handed alpha
Helix 9
AA9
A
159 167Right-handed alpha
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
184 186Right-handed 310
Helix 12
AB3
A
216 229Right-handed alpha
Helix 13
AB4
A
235 248Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 279Right-handed alpha
Helix 16
AB7
A
290 297Right-handed alpha
Helix 17
AB8
A
328 330Right-handed 310
Helix 18
AB9
A
394 396Right-handed 310
Helix 19
AC1
A
488 505Right-handed alpha
Helix 20
AC2
A
512 516Right-handed 310
Helix 21
AC3
A
524 537Right-handed alpha
Helix 22
AC4
A
544 554Right-handed alpha
Helix 23
AC5
A
555 560Right-handed 310
Helix 24
AC6
A
561 563Right-handed 310
Helix 25
AC7
A
564 572Right-handed alpha
Helix 26
AC8
A
576 589Right-handed alpha
Helix 27
AC9
A
594 599Right-handed alpha
Helix 28
AD1
A
600 603Right-handed 310
Helix 29
AD2
A
608 622Right-handed alpha
Helix 30
AD3
A
624 638Right-handed alpha
Helix 31
AD4
A
639 642Right-handed 310
Helix 32
AD5
A
647 660Right-handed alpha
Helix 33
AD6
A
660 674Right-handed alpha
Helix 34
AD7
A
680 695Right-handed alpha
Helix 35
AD8
A
697 722Right-handed alpha
Helix 36
AD9
A
727 741Right-handed alpha
Helix 37
AE1
A
741 748Right-handed alpha
Helix 38
AE2
A
789 793Right-handed 310
Helix 39
AE3
A
807 826Right-handed alpha
Helix 40
AE4
A
857 864Right-handed alpha
Helix 41
AE5
A
875 885Right-handed alpha
Helix 42
AE6
A
887 912Right-handed alpha
Helix 43
AE7
A
939 943Right-handed 310
Helix 44
AE8
A
957 965Right-handed alpha
Helix 45
AE9
A
970 973Right-handed 310
Helix 46
AF1
A
974 993Right-handed alpha
Helix 47
AF2
A
994 1005Right-handed alpha
Helix 48
AF3
A
1020 1027Right-handed alpha
Helix 49
AF4
A
1031 1048Right-handed alpha
Helix 50
AF5
B
341 345Right-handed alpha
Helix 51
AF6
B
400 411Right-handed alpha
Helix 52
AF7
B
445 509Right-handed alpha
Helix 53
AF8
B
517 585Right-handed alpha
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There are 10 sheets in PDB entry 5SXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 25first strand
Strand 2
A
31 37anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
100 102anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 212first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 392first strand
Strand 2
A
333 338anti-parallel
Strand 3
A
475 477anti-parallel
Strand 4
A
439 441anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 802anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
369 371anti-parallel
Strand 3
B
381 382anti-parallel
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