Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SXI entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5SXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26SER 6
A
 GLY 8MET 789
A
 GLU 791ASP 1056
B
 GLN 329LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5SXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 55Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
114 122Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 155Right-handed alpha
Helix 8
AA8
A
159 167Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
216 229Right-handed alpha
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
266 269Right-handed 310
Helix 14
AB5
A
270 280Right-handed alpha
Helix 15
AB6
A
290 297Right-handed alpha
Helix 16
AB7
A
328 330Right-handed 310
Helix 17
AB8
A
488 505Right-handed alpha
Helix 18
AB9
A
524 536Right-handed alpha
Helix 19
AC1
A
544 555Right-handed alpha
Helix 20
AC2
A
556 563Right-handed 310
Helix 21
AC3
A
564 570Right-handed alpha
Helix 22
AC4
A
576 589Right-handed alpha
Helix 23
AC5
A
594 599Right-handed alpha
Helix 24
AC6
A
600 603Right-handed 310
Helix 25
AC7
A
608 623Right-handed alpha
Helix 26
AC8
A
624 631Right-handed alpha
Helix 27
AC9
A
631 638Right-handed alpha
Helix 28
AD1
A
639 642Right-handed 310
Helix 29
AD2
A
647 660Right-handed alpha
Helix 30
AD3
A
660 674Right-handed alpha
Helix 31
AD4
A
675 677Right-handed 310
Helix 32
AD5
A
680 695Right-handed alpha
Helix 33
AD6
A
697 720Right-handed alpha
Helix 34
AD7
A
727 741Right-handed alpha
Helix 35
AD8
A
741 750Right-handed alpha
Helix 36
AD9
A
789 793Right-handed 310
Helix 37
AE1
A
807 826Right-handed alpha
Helix 38
AE2
A
857 863Right-handed alpha
Helix 39
AE3
A
874 885Right-handed alpha
Helix 40
AE4
A
887 912Right-handed alpha
Helix 41
AE5
A
939 944Right-handed 310
Helix 42
AE6
A
957 965Right-handed alpha
Helix 43
AE7
A
970 973Right-handed 310
Helix 44
AE8
A
974 993Right-handed alpha
Helix 45
AE9
A
994 1005Right-handed alpha
Helix 46
AF1
A
1015 1027Right-handed alpha
Helix 47
AF2
A
1031 1048Right-handed alpha
Helix 48
AF3
B
341 348Right-handed alpha
Helix 49
AF4
B
402 411Right-handed alpha
Helix 50
AF5
B
446 511Right-handed alpha
Helix 51
AF6
B
516 585Right-handed alpha
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There are 9 sheets in PDB entry 5SXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
257 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
401 408anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 802anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 372first strand
Strand 2
B
379 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il