Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SXJ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5SXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -26SER 6
A
 GLY 8ASN 157
A
 PRO 159MET 789
A
 GLU 791TRP 1051
B
 LEU 328LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5SXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
88 93Right-handed 310
Helix 4
AA4
A
114 122Right-handed alpha
Helix 5
AA5
A
125 130Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
159 167Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
216 230Right-handed alpha
Helix 11
AB2
A
235 248Right-handed alpha
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
270 280Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
328 330Right-handed 310
Helix 16
AB7
A
394 396Right-handed 310
Helix 17
AB8
A
488 505Right-handed alpha
Helix 18
AB9
A
526 536Right-handed alpha
Helix 19
AC1
A
544 554Right-handed alpha
Helix 20
AC2
A
554 559Right-handed alpha
Helix 21
AC3
A
560 563Right-handed 310
Helix 22
AC4
A
564 572Right-handed alpha
Helix 23
AC5
A
576 589Right-handed alpha
Helix 24
AC6
A
594 599Right-handed alpha
Helix 25
AC7
A
600 603Right-handed 310
Helix 26
AC8
A
608 623Right-handed alpha
Helix 27
AC9
A
624 631Right-handed alpha
Helix 28
AD1
A
631 642Right-handed alpha
Helix 29
AD2
A
647 660Right-handed alpha
Helix 30
AD3
A
660 674Right-handed alpha
Helix 31
AD4
A
680 695Right-handed alpha
Helix 32
AD5
A
697 722Right-handed alpha
Helix 33
AD6
A
727 741Right-handed alpha
Helix 34
AD7
A
741 748Right-handed alpha
Helix 35
AD8
A
789 793Right-handed 310
Helix 36
AD9
A
807 827Right-handed alpha
Helix 37
AE1
A
857 864Right-handed alpha
Helix 38
AE2
A
874 885Right-handed alpha
Helix 39
AE3
A
887 912Right-handed alpha
Helix 40
AE4
A
957 965Right-handed alpha
Helix 41
AE5
A
970 973Right-handed 310
Helix 42
AE6
A
974 994Right-handed alpha
Helix 43
AE7
A
994 1005Right-handed alpha
Helix 44
AE8
A
1006 1008Right-handed 310
Helix 45
AE9
A
1019 1027Right-handed alpha
Helix 46
AF1
A
1031 1048Right-handed alpha
Helix 47
AF2
B
341 348Right-handed alpha
Helix 48
AF3
B
401 408Right-handed alpha
Helix 49
AF4
B
447 505Right-handed alpha
Helix 50
AF5
B
520 583Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 5SXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
285 289anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
474 477anti-parallel
Strand 4
A
439 442anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
401 408anti-parallel
Strand 4
A
421 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 802anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
368 370anti-parallel
Strand 3
B
381 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il