Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SXL entry

There is 1 chain in PDB entry 5SXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASP 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5SXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
37 48Right-handed alpha
Helix 4
AA4
A
49 55Right-handed alpha
Helix 5
AA5
A
65 77Right-handed alpha
Helix 6
AA6
A
124 127Right-handed 310
Helix 7
AA7
A
128 133Right-handed alpha
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
166 175Right-handed alpha
Helix 10
AB1
A
177 179Right-handed 310
Helix 11
AB2
A
180 189Right-handed alpha
Helix 12
AB3
A
244 258Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5SXL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
94 101anti-parallel
Strand 5
A
80 87anti-parallel
Strand 6
A
193 203anti-parallel
Strand 7
A
214 219anti-parallel
Strand 8
A
222 230anti-parallel
Strand 9
A
236 242anti-parallel
Strand 10
A
147 150anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
94 101anti-parallel
Strand 5
A
80 87anti-parallel
Strand 6
A
193 203anti-parallel
Strand 7
A
206 209anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il