Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SXV entry

There are 10 chains in PDB entry 5SXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	ILE 317
B	ARG 10	ILE 317
C	ARG 10	ILE 317
D	ARG 10	ILE 317
E	ARG 10	ILE 317
F	ARG 10	ILE 317
G	ARG 10	ILE 317
H	ARG 10	ILE 317
I	ARG 10	ILE 317
J	ARG 10	ILE 317

There are 95 helices in PDB entry 5SXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	69	Right-handed alpha
Helix 2	AA2	A	201	208	Right-handed alpha
Helix 3	AA3	A	208	220	Right-handed alpha
Helix 4	AA4	A	221	225	Right-handed 310
Helix 5	AA5	A	227	253	Right-handed alpha
Helix 6	AA6	A	260	284	Right-handed alpha
Helix 7	AA7	A	287	291	Right-handed 310
Helix 8	AA8	A	295	300	Right-handed alpha
Helix 9	AA9	A	303	312	Right-handed alpha
Helix 10	AB1	B	60	69	Right-handed alpha
Helix 11	AB2	B	154	158	Right-handed 310
Helix 12	AB3	B	201	208	Right-handed alpha
Helix 13	AB4	B	208	220	Right-handed alpha
Helix 14	AB5	B	221	223	Right-handed 310
Helix 15	AB6	B	227	253	Right-handed alpha
Helix 16	AB7	B	260	281	Right-handed alpha
Helix 17	AB8	B	282	286	Right-handed 310
Helix 18	AB9	B	287	291	Right-handed 310
Helix 19	AC1	B	299	302	Right-handed 310
Helix 20	AC2	B	303	312	Right-handed alpha
Helix 21	AC3	C	60	69	Right-handed alpha
Helix 22	AC4	C	154	158	Right-handed 310
Helix 23	AC5	C	201	208	Right-handed alpha
Helix 24	AC6	C	208	220	Right-handed alpha
Helix 25	AC7	C	221	225	Right-handed 310
Helix 26	AC8	C	227	253	Right-handed alpha
Helix 27	AC9	C	260	284	Right-handed alpha
Helix 28	AD1	C	287	291	Right-handed 310
Helix 29	AD2	C	303	312	Right-handed alpha
Helix 30	AD3	D	50	54	Right-handed 310
Helix 31	AD4	D	60	69	Right-handed alpha
Helix 32	AD5	D	201	208	Right-handed alpha
Helix 33	AD6	D	208	220	Right-handed alpha
Helix 34	AD7	D	221	223	Right-handed 310
Helix 35	AD8	D	227	253	Right-handed alpha
Helix 36	AD9	D	260	281	Right-handed alpha
Helix 37	AE1	D	287	291	Right-handed 310
Helix 38	AE2	D	303	312	Right-handed alpha
Helix 39	AE3	E	50	54	Right-handed 310
Helix 40	AE4	E	60	69	Right-handed alpha
Helix 41	AE5	E	154	158	Right-handed 310
Helix 42	AE6	E	201	208	Right-handed alpha
Helix 43	AE7	E	208	220	Right-handed alpha
Helix 44	AE8	E	221	223	Right-handed 310
Helix 45	AE9	E	227	253	Right-handed alpha
Helix 46	AF1	E	260	281	Right-handed alpha
Helix 47	AF2	E	287	291	Right-handed 310
Helix 48	AF3	E	303	308	Right-handed alpha
Helix 49	AF4	F	60	69	Right-handed alpha
Helix 50	AF5	F	154	158	Right-handed 310
Helix 51	AF6	F	201	208	Right-handed alpha
Helix 52	AF7	F	208	219	Right-handed alpha
Helix 53	AF8	F	220	223	Right-handed 310
Helix 54	AF9	F	227	253	Right-handed alpha
Helix 55	AG1	F	260	284	Right-handed alpha
Helix 56	AG2	F	287	291	Right-handed 310
Helix 57	AG3	F	303	312	Right-handed alpha
Helix 58	AG4	G	50	54	Right-handed 310
Helix 59	AG5	G	60	69	Right-handed alpha
Helix 60	AG6	G	201	208	Right-handed alpha
Helix 61	AG7	G	208	220	Right-handed alpha
Helix 62	AG8	G	221	225	Right-handed 310
Helix 63	AG9	G	227	253	Right-handed alpha
Helix 64	AH1	G	260	281	Right-handed alpha
Helix 65	AH2	G	303	312	Right-handed alpha
Helix 66	AH3	H	50	54	Right-handed 310
Helix 67	AH4	H	60	69	Right-handed alpha
Helix 68	AH5	H	154	158	Right-handed 310
Helix 69	AH6	H	201	208	Right-handed alpha
Helix 70	AH7	H	208	220	Right-handed alpha
Helix 71	AH8	H	221	225	Right-handed 310
Helix 72	AH9	H	227	253	Right-handed alpha
Helix 73	AI1	H	260	284	Right-handed alpha
Helix 74	AI2	H	287	291	Right-handed 310
Helix 75	AI3	H	303	312	Right-handed alpha
Helix 76	AI4	I	50	54	Right-handed 310
Helix 77	AI5	I	61	69	Right-handed alpha
Helix 78	AI6	I	201	208	Right-handed alpha
Helix 79	AI7	I	208	220	Right-handed alpha
Helix 80	AI8	I	221	223	Right-handed 310
Helix 81	AI9	I	227	253	Right-handed alpha
Helix 82	AJ1	I	260	284	Right-handed alpha
Helix 83	AJ2	I	287	291	Right-handed 310
Helix 84	AJ3	I	303	312	Right-handed alpha
Helix 85	AJ4	J	50	54	Right-handed 310
Helix 86	AJ5	J	60	69	Right-handed alpha
Helix 87	AJ6	J	154	158	Right-handed 310
Helix 88	AJ7	J	182	186	Right-handed 310
Helix 89	AJ8	J	201	208	Right-handed alpha
Helix 90	AJ9	J	208	221	Right-handed alpha
Helix 91	AK1	J	222	225	Right-handed 310
Helix 92	AK2	J	227	253	Right-handed alpha
Helix 93	AK3	J	260	281	Right-handed alpha
Helix 94	AK4	J	287	291	Right-handed 310
Helix 95	AK5	J	303	312	Right-handed alpha

There are 29 sheets in PDB entry 5SXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	149	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	149	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	169	174	anti-parallel
Strand 5	I	167	169	parallel
Strand 6	I	187	199	anti-parallel
Strand 7	I	171	174	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	187	199	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	77	78	first strand
Strand 2	I	123	131	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	160	162	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	101	111	anti-parallel
Strand 4	C	32	42	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	149	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	149	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	187	199	anti-parallel
Strand 3	D	171	174	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	148	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	188	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	188	199	anti-parallel
Strand 4	E	170	173	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	32	44	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	140	149	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	167	174	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	32	44	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	140	149	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	170	174	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	99	111	anti-parallel
Strand 4	H	32	44	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	140	149	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	160	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	167	174	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	140	148	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	32	44	anti-parallel
Strand 5	J	12	27	anti-parallel
Strand 6	J	140	148	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	170	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXV